Stem-loop ath-MIR8172

Accession

MI0026802

Description

Arabidopsis thaliana ath-MIR8172 precursor miRNA

Sequence

63914 reads, 440.0 reads per million, 184 experiments

auccaaaaaguuacuaggccuuguuuguuucuccauccauAUGGAUCAUCUAGAUGGAGAUgaaaaaugauguuuguuuuuuacaaauuaacagaucauuuagaugaaucauuuggauguuccaugugaaugacuuuguaaauuuAGGCUAAUUUGUGAAACUCAUUuggau
(((((((.((((((..(((((.(((((......(((.((((((((.(((((((((((.......(((((((((((((.....))))))......))))))).......))))))))))).)))))))).)))......)))))..))))).....)))..)))..)))))))

Structure

       -a   --   ---ua     -u     uuucuc   c        U           AGAUgaa       ------      u 
auccaaa  agu  uac     ggccu  guuug      cau cauAUGGA CAUCUAGAUGG       aaaugau      guuugu u
|||||||  |||  |||     |||||  |||||      ||| |||||||| |||||||||||       |||||||      |||||| u
uagguUU  UCA  GUG     UCGGA  uaaau      gua guguaccu guagguuuacu       uuuacua      uaaaca u
       AC   AA   UUUAA     uu     guuuca   a        u           aaguaga       gacaau      u 

Annotation confidence Low

Genome context

chr4: 7102461-7102632 [-]

Mature ath-miR8172-5p

• Accession: MIMAT0032771
• Description: Arabidopsis thaliana ath-miR8172-5p mature miRNA
• Sequence: 41 - AUGGAUCAUCUAGAUGGAGAU - 61
• Evidence: experimental ; Illumina [1]

Mature ath-miR8172-3p

• Accession: MIMAT0053987
• Description: Arabidopsis thaliana ath-miR8172-3p mature miRNA
• Sequence: 146 - AGGCUAAUUUGUGAAACUCAUU - 167
• Evidence: experimental ; unknown

References

1. PubMed ID: 24119003
   Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
   Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
   BMC Genomics (2013) 14:701