miRBase entry: ath-MIR8180

Stem-loop ath-MIR8180


Accession
MI0026810
Description
Arabidopsis thaliana ath-MIR8180 precursor miRNA


Sequence

aguaacgaaauucuuuacauauacauguguauguaaauauuuuuguuacuauuugaaccgcaccgcauuuuauccgcaguugaaucgcacgucuccacucggaaccaaugagucugaaugaugacugcguuuUGCGGUGCGGGAGAAGUGCggugcaguucaaauaguaacgaaaauacauagauacauauguauauauagagauuuugauacu
((((.((((((.(((((.((((((((((((((.((..(((((((((((((((((((((.((((((((((((.((((((.(((((.((((.(((..((.(((((.(......)))))).))..))))))).)))).).)))))).)))))))))))).)))))))))))))))))))))..)).)))))))))))))).))))))))))).))))

Structure
    a      u     c              g  aa                     c            a      g -    u    c   uc  c     a ca 
agua cgaaau cuuua auauacauguguau ua  uauuuuuguuacuauuugaac gcaccgcauuuu uccgca u ugaa cgca guc  ca ucgga c  a
|||| |||||| ||||| |||||||||||||| ||  ||||||||||||||||||||| |||||||||||| |||||| | |||| |||| |||  || ||||| |   
ucau guuuua gagau uauauguauacaua au  auaaaagcaaugauaaacuug cguggCGUGAAG GGGCGU G GUuu gcgu cag  gu agucu g  u
    a      -     a              g  ac                     a            A      G C    u    -   ua  a     - ag 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr2: 2063848-2064061 [+]

Database links

Mature ath-miR8180

Accession MIMAT0032779
Description Arabidopsis thaliana ath-miR8180 mature miRNA
Sequence 133 - UGCGGUGCGGGAGAAGUGC - 151
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24119003
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
    Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
    BMC Genomics (2013) 14:701