Stem-loop ath-MIR8165

Accession

MI0026793

Description

Arabidopsis thaliana ath-MIR8165 precursor miRNA

Sequence

17686 reads, 93.0 reads per million, 164 experiments

gauugcuauaaaguguaaAAUAAUUAUCGUUCAAACUUGUACUauaugauuugguguuuugucuuuaaacucaucuaaaaguaaaacuauaaauuAAUGGAGGCAAGUGUGAAGGAGAUuucacacgauguacaauu
(((((.((((..((((.....((((.((.((((.((((((.((((.(((((((..((((((.((((...........))))))))))..)))))))))))..)))))).)))).))))))..))))..)))))))))

Structure

     c    aa    aaAAU    A  G    A      -A    a       gu      u    aaac 
gauug uaua  gugu     AAUU UC UUCA ACUUGU  CUau ugauuug  guuuug cuuu    u
||||| ||||  ||||     |||| || |||| ||||||  |||| |||||||  |||||| ||||    c
uuaac augu  caca     uUAG AG AAGU UGAACG  GGUA Auuaaau  caaaau gaaa    a
     -    ag    ---cu    -  G    G      GA    -       au      -    aucu 

Annotation confidence Not enough data

Genome context

chr3: 16538489-16538625 [-]

Mature ath-miR8165-5p

• Accession: MIMAT0053979
• Description: Arabidopsis thaliana ath-miR8165-5p mature miRNA
• Sequence: 19 - AAUAAUUAUCGUUCAAACUUGUACU - 43
• Evidence: experimental ; unknown

Mature ath-miR8165-3p

• Accession: MIMAT0032761
• Description: Arabidopsis thaliana ath-miR8165-3p mature miRNA
• Sequence: 96 - AAUGGAGGCAAGUGUGAAGGAGAU - 119
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24119003
   Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots
   Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutiérrez RA
   BMC Genomics (2013) 14:701