Stem-loop ath-MIR833b

Accession

MI0019230

Description

Arabidopsis thaliana ath-MIR833b precursor miRNA

Literature search

2 open access papers mention ath-MIR833b
(3 sentences)

Sequence

11327 reads, 64.0 reads per million, 178 experiments

cuUGUUUGUUGACAUCGGUCUAGcucaaaccauacauauuugcaaagauguuuugguuugaacuAGACCGAGUACAACAAACAAA
.((((((((((((.(((((((((.((((((((...((((((....))))))..)))))))).))))))))))).)))))))))).

Structure

c          -  A         c        uac      g 
 uUGUUUGUUG AC UCGGUCUAG ucaaacca   auauuu c
 |||||||||| || ||||||||| ||||||||   ||||||  
 AACAAACAAC UG AGCCAGAuc aguuuggu   uguaga a
A          A  -         a        -uu      a 

Annotation confidence High

Genome context

chr1: 29525202-29525286 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR833b

Mature ath-miR833b-5p

• Accession: MIMAT0022419
• Description: Arabidopsis thaliana ath-miR833b-5p mature miRNA
• Sequence: 3 - UGUUUGUUGACAUCGGUCUAG - 23
• Evidence: experimental ; Illumina [1]

Mature ath-miR833b-3p

• Accession: MIMAT0053946
• Description: Arabidopsis thaliana ath-miR833b-3p mature miRNA
• Sequence: 65 - AGACCGAGUACAACAAACAAA - 85
• Evidence: experimental ; unknown

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176