Stem-loop ath-MIR823

Accession

MI0005380

Description

Arabidopsis thaliana ath-MIR823 precursor miRNA

Literature search

2 open access papers mention ath-MIR823
(3 sentences)

Sequence

58734 reads, 272.0 reads per million, 184 experiments

aauuucagagauacuaauccaagagauggcggauacguuuuacaaucacgaauCUUGUAUGAUCACUAACCAUUggaacaauaagaguauauaaugaguauaucaccauuuaguucuagUGGGUGGUGAUCAUAUAAGAUUGguaaugguaacagugaaacauaucccccaucuauugggauuaauuaguc
..............((((((...((((((.(((((.(((((((.(((((.(((((((((((((((((..((((((((((((.....((((((.....))))))......)).))))))))))..))))))))))))))))).))...)))....))))))).))))).))))))....)))))).......

Structure

aauuucagagauac      -aag      c     c       ---a   ---  g                 AA          -  -uaaga      a 
              uaaucc    agaugg ggaua guuuuac    auc   ac aauCUUGUAUGAUCACU  CCAUUggaac aa      guauau a
              ||||||    |||||| ||||| |||||||    |||   || |||||||||||||||||  |||||||||| ||      |||||| u
              auuagg    ucuacc ccuau caaagug    ugg   ug UUAGAAUAUACUAGUGG  GGUgaucuug uu      uauaug g
-------cugauua      guua      c     a       acaa   uaa  G                 UG          a  uaccac      a 

Annotation confidence High

Genome context

chr3: 4496775-4496965 [-]

Mature ath-miR823-5p

• Accession: MIMAT0053860
• Description: Arabidopsis thaliana ath-miR823-5p mature miRNA
• Sequence: 54 - CUUGUAUGAUCACUAACCAUU - 74
• Evidence: experimental ; unknown

Mature ath-miR823-3p

• Accession: MIMAT0004240
• Description: Arabidopsis thaliana ath-miR823-3p mature miRNA
• Sequence: 120 - UGGGUGGUGAUCAUAUAAGAUUG - 142
• Evidence: experimental ; 454 [1-2], Northern [1], cloned [2], Illumina [3]

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


3. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219