Accession
MI0002409
Description
Arabidopsis thaliana
ath-MIR447c precursor miRNA MIR447
Gene
family?
family?
RF04149;
MIR447
Literature search
3 open access papers mention ath-MIR447c
(19 sentences)
(19 sentences)
Sequence
15589
reads,
114.0
reads per million, 181 experiments
cauucuuaauauacaauacuucuuuuucaugcauuaagCCCCUUACAAUGUCGAGUAAAcaaagcauguguccgcuaauauugucuucgagcuugguauuuuuguauucugauacgguauuuggggacgacaucuuuuguuGACUCGAUAUAAGAAGGGGguuuguggaagaaauuguaguauuauauaucaagaaug
(((((((.(((((.((((((.(..((((.(.(((.((.((((((...(((((((((.(((((((.((((((((.(.((((((((..((.((...(((((....))))))))).)))))))).).)))).)))).))))))).)))))))))...)))))).)).))).).))))..).)))))).))))).)))))))
(((((((.(((((.((((((.(..((((.(.(((.((.((((((...(((((((((.(((((((.((((((((.(.((((((((..((.((...(((((....))))))))).)))))))).).)))).)))).))))))).)))))))))...)))))).)).))).).))))..).)))))).))))).)))))))
Structure
a c u uu a g u g ACA A c - g u cu g cuu u
cauucuu auaua aauacu c uuuc u cau aa CCCCUU AUGUCGAGU AAcaaag augu gucc c aauauugu uc ag gguau u
||||||| ||||| |||||| | |||| | ||| || |||||| ||||||||| ||||||| |||| |||| | |||||||| || || |||||
guaagaa uauau uuauga g aaag a gug uu GGGGAA UAUAGCUCA uuguuuu uaca cagg g uuauggca ag uc uuaug u
c a u uu a g u g GAA G c g g u -u - --- u
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chr4: 1523306-1523503 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR447c
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR447c-5p
| Accession | MIMAT0020346 |
| Description | Arabidopsis thaliana ath-miR447c-5p mature miRNA |
| Sequence | 39 - CCCCUUACAAUGUCGAGUAAA - 59 |
| Evidence |
experimental
Illumina [4] |
Mature ath-miR447c-3p
| Accession | MIMAT0002115 |
| Description | Arabidopsis thaliana ath-miR447c-3p mature miRNA |
| Sequence | 142 - GACUCGAUAUAAGAAGGGG - 160 |
| Evidence |
experimental
cloned [1], 5'RACE [2], 454 [3] |
References
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