Accession
MI0019228
Description
Arabidopsis thaliana
ath-MIR858b precursor miRNA
Literature search
4 open access papers mention ath-MIR858b
(7 sentences)
(7 sentences)
Sequence
ccuacccgaaggguuuuggagaguagacaaagagacaaacauagaggugugaguuugguuugguuuuggguuuugggggguugguaguguuugagguccauaugccucgaucuuccgcuucuauuaauuaauuuucucuauuagaaauauuaucuaauuauuccacuccaucgaaccaugcacauauauaaugauauguauaagcccaucaaaguuuuugaauucagugcaaacacuugucaaaggagcagucccgaucugguuccaucuuaucUUCGUUGUCUGUUCGACCUUGgcuuuggc
.....((((((......((.((((((((((.(((((..((((....))))..)))(((((((((...((((....((((((.((.((...(((((((......))))))).)).))))))))((((..(((((((((.....))))).))))..))))......)))).))))))))).((..(((((((....)))))))..))...........(((((....((((....))))..)))))(((((((.......)).))))).........)).))))))))))..))....)))))).
.....((((((......((.((((((((((.(((((..((((....))))..)))(((((((((...((((....((((((.((.((...(((((((......))))))).)).))))))))((((..(((((((((.....))))).))))..))))......)))).))))))))).((..(((((((....)))))))..))...........(((((....((((....))))..)))))(((((((.......)).))))).........)).))))))))))..))....)))))).
Structure
ccuac gguuuu -a a ---------------------------------------------------------------------------gacaaacauagaggugugaguu uuu --------------------------------------uuug u u ugu cc
ccgaag gg gaguagacaa ga ugguuuggu gggu gggggu gg ag uugaggu a
|||||| || |||||||||| || ||||||||| |||| |||||| || || |||||||
gguuuc CC CUUGUCUGUU CU accaagcua cuca ucuucg cc uc agcuccg u
----c --gGUU AG G Ucuauucuaccuuggucuagcccugacgaggaaacuguucacaaacgugacuuaaguuuuugaaacuacccgaauauguauaguaauauauacacgu --c ccuuauuaaucuauuauaaagauuaucucuuuuaauuaauua - u --u ua
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
chr1: 26772633-26772935 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR858b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR858b
| Accession | MIMAT0022417 |
| Description | Arabidopsis thaliana ath-miR858b mature miRNA |
| Sequence | 275 - UUCGUUGUCUGUUCGACCUUG - 295 |
| Evidence |
experimental
Illumina [1] |
References
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