Stem-loop ath-MIR858b

Accession

MI0019228

Description

Arabidopsis thaliana ath-MIR858b precursor miRNA

Literature search

4 open access papers mention ath-MIR858b
(7 sentences)

Sequence

ccuacccgaaggguuuuggagaguagacaaagagacaaacauagaggugugaguuugguuugguuuuggguuuugggggguugguaguguuugagguccauaugccucgaucuuccgcuucuauuaauuaauuuucucuauuagaaauauuaucuaauuauuccacuccaucgaaccaugcacauauauaaugauauguauaagcccaucaaaguuuuugaauucagugcaaacacuugucaaaggagcagucccgaucugguuccaucuuaucUUCGUUGUCUGUUCGACCUUGgcuuuggc
.....((((((......((.((((((((((.(((((..((((....))))..)))(((((((((...((((....((((((.((.((...(((((((......))))))).)).))))))))((((..(((((((((.....))))).))))..))))......)))).))))))))).((..(((((((....)))))))..))...........(((((....((((....))))..)))))(((((((.......)).))))).........)).))))))))))..))....)))))).

Structure

ccuac      gguuuu  -a          a  ---------------------------------------------------------------------------gacaaacauagaggugugaguu         uuu    --------------------------------------uuug      u  u  ugu       cc 
     ccgaag      gg  gaguagacaa ga                                                                                                 ugguuuggu   gggu                                          gggggu gg ag   uugaggu  a
     ||||||      ||  |||||||||| ||                                                                                                 |||||||||   ||||                                          |||||| || ||   |||||||   
     gguuuc      CC  CUUGUCUGUU CU                                                                                                 accaagcua   cuca                                          ucuucg cc uc   agcuccg  u
----c      --gGUU  AG          G  Ucuauucuaccuuggucuagcccugacgaggaaacuguucacaaacgugacuuaaguuuuugaaacuacccgaauauguauaguaauauauacacgu         --c    ccuuauuaaucuauuauaaagauuaucucuuuuaauuaauua      -  u  --u       ua 

Annotation confidence Not enough data

Genome context

chr1: 26772633-26772935 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ath-MIR858b

Mature ath-miR858b

• Accession: MIMAT0022417
• Description: Arabidopsis thaliana ath-miR858b mature miRNA
• Sequence: 275 - UUCGUUGUCUGUUCGACCUUG - 295
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 21940835
   High-resolution experimental and computational profiling of tissue-specific known and novel miRNAs in Arabidopsis
   "Breakfield NW, Corcoran DL, Petricka JJ, Shen J, Sae-Seaw J, Rubio-Somoza I, Weigel D, Ohler U, Benfey PN"
   "Genome Res (2012) 22:163-176