Stem-loop ath-MIR860

Accession

MI0005437

Description

Arabidopsis thaliana ath-MIR860 precursor miRNA MIR860

Gene
family

RF03921; MIR860

Literature search

4 open access papers mention ath-MIR860
(11 sentences)

Sequence

10478 reads, 86.0 reads per million, 177 experiments

augucuugguuaaauucaauauauauaGUCCAAUCUAUUGAAGUACUAGUacaccagcucuaauaagcugauguggguaaguaguUCAAUAGAUUGGACUAUGUAUauuaaauuugacuaagagau
((.(((((((((((((.(((((((((((((((((((((((((.((((..((((.(((((......))))).))))....)))).))))))))))))))))))))))))).))))))))))))).))

Structure

  g             c                         G    --AG    c     cu 
au ucuugguuaaauu aauauauauaGUCCAAUCUAUUGAA UACU    Uaca cagcu  a
|| ||||||||||||| ||||||||||||||||||||||||| ||||    |||| |||||   
ua agaaucaguuuaa uuaUAUGUAUCAGGUUAGAUAACUu auga    gugu gucga  a
  g             a                         g    augg    a     au 

Annotation confidence Medium

Genome context

chr5: 9098791-9098916 [+]

Mature ath-miR860-5p

• Accession: MIMAT0053886
• Description: Arabidopsis thaliana ath-miR860-5p mature miRNA
• Sequence: 28 - GUCCAAUCUAUUGAAGUACUAGU - 50
• Evidence: experimental ; unknown

Mature ath-miR860-3p

• Accession: MIMAT0004304
• Description: Arabidopsis thaliana ath-miR860-3p mature miRNA
• Sequence: 86 - UCAAUAGAUUGGACUAUGUAU - 106
• Evidence: experimental ; 454 [1], cloned [1], Illumina [2]

References

1. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


2. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219