Accession
MI0001010
Description
Arabidopsis thaliana
ath-MIR395d precursor miRNA
Literature search
25 open access papers mention ath-MIR395d
(105 sentences)
(105 sentences)
Sequence
69461
reads,
491.0
reads per million, 185 experiments
auguccucuagaGUUCUCCUGAACACUUCAUUGgaaauuuguuauucaguaagcuaacaguuaauuccACUGAAGUGUUUGGGGGAACUCccgaugucau
(((.(.((..((((((((((((((((((((.(((((..((((((..........))))))....))))).))))))))))))))))))))..)).).)))
(((.(.((..((((((((((((((((((((.(((((..((((((..........))))))....))))).))))))))))))))))))))..)).).)))
Structure
u c ua U --au uuca aug c uc gaGUUCUCCUGAACACUUCA UGgaa uuguua g ||| | || |||||||||||||||||||| ||||| |||||| uac g ag CUCAAGGGGGUUUGUGAAGU Accuu gacaau u u u cc C aauu cgaa
Annotation confidence
High
Do you think this miRNA is real?
Comments
This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1].
Genome context
chr1: 26269979-26270078 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR395d
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR395d-5p
| Accession | MIMAT0053823 |
| Description | Arabidopsis thaliana ath-miR395d-5p mature miRNA |
| Sequence | 13 - GUUCUCCUGAACACUUCAUUG - 33 |
| Evidence |
experimental
unknown |
Mature ath-miR395d-3p
| Accession | MIMAT0000941 |
| Description | Arabidopsis thaliana ath-miR395d-3p mature miRNA |
| Sequence | 69 - ACUGAAGUGUUUGGGGGAACUC - 90 |
| Evidence |
experimental
5'RACE [1], Northern [1], PCR [1], MPSS [2], 454 [3], Illumina [4] |
References
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