Accession
MI0001007
Description
Arabidopsis thaliana
ath-MIR395a precursor miRNA
Literature search
28 open access papers mention ath-MIR395a
(162 sentences)
(162 sentences)
Sequence
78279
reads,
579.0
reads per million, 185 experiments
augucuccuagaGUUCCUCUGAGCACUUCAUUGgggauacaauuuuucuaaaugauuauccACUGAAGUGUUUGGGGGAACUCccggacccau
(((..(((..((((((((((((((((((((.((((......((((....)))).....)))).))))))))))))))))))))..)))..)))
(((..(((..((((((((((((((((((((.((((......((((....)))).....)))).))))))))))))))))))))..)))..)))
Structure
uc ua U gauaca u aug ucc gaGUUCCUCUGAGCACUUCA UGgg auuu u ||| ||| |||||||||||||||||||| |||| |||| uac agg CUCAAGGGGGUUUGUGAAGU Accu uaaa c cc cc C -auuag u
Annotation confidence
High
Do you think this miRNA is real?
Comments
This sequence belongs to the miR395 family of miRNAs, which are predicted to target mRNAs coding for ATP sulphurylases [1].
Genome context
chr1: 9363196-9363288 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR395a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR395a-5p
| Accession | MIMAT0053820 |
| Description | Arabidopsis thaliana ath-miR395a-5p mature miRNA |
| Sequence | 13 - GUUCCUCUGAGCACUUCAUUG - 33 |
| Evidence |
experimental
unknown |
Mature ath-miR395a-3p
| Accession | MIMAT0000938 |
| Description | Arabidopsis thaliana ath-miR395a-3p mature miRNA |
| Sequence | 62 - ACUGAAGUGUUUGGGGGAACUC - 83 |
| Evidence |
experimental
5'RACE [1], Northern [1], PCR [1], MPSS [2], 454 [3], Illumina [4] |
References
|
