Accession
MI0001025
Description
Arabidopsis thaliana
ath-MIR399f precursor miRNA
Literature search
35 open access papers mention ath-MIR399f
(174 sentences)
(174 sentences)
Sequence
auaugcauuacagggcaagaucaccauuggcagagaucuauuacuucauucuugcaucauaugcauaaauguuuguggugagcucucUGCCAAAGGAGAUUUGCCCGGuaauucucuu
......(((((.(((((.((((.((.((((((((((.(((((((..((((..(((((...)))))..))))...))))).)).)))))))))).)).))))))))).)))))......
......(((((.(((((.((((.((.((((((((((.(((((((..((((..(((((...)))))..))))...))))).)).)))))))))).)).))))))))).)))))......
Structure
auaugc a a a a u - -uu cu c
auuac gggca gauc cc uuggcagaga cu auuac cauu ugcau
||||| ||||| |||| || |||||||||| || ||||| |||| ||||| a
uaauG CCCGU UUAG GG AACCGUcucu ga uggug guaa acgua
uucucu G - A A c g uuu au u
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].
Genome context
chr2: 14444997-14445114 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ath-MIR399f
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR399f
| Accession | MIMAT0000956 |
| Description | Arabidopsis thaliana ath-miR399f mature miRNA |
| Sequence | 88 - UGCCAAAGGAGAUUUGCCCGG - 108 |
| Evidence |
experimental
PCR [1], cloned [2], Northern [2], 454 [3-4], MPSS [3], Illumina [5] |
References
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