Stem-loop ath-MIR868

Accession

MI0005446

Description

Arabidopsis thaliana ath-MIR868 precursor miRNA

Sequence

23958 reads, 109.0 reads per million, 146 experiments

gaauaagcAUUGUCGGCACUUGAGAAUGUaaagugaugaucagcuaucguauuucaugucguaauaguagucacguuagggugauauaacgaggcgagaguuauaucaucauagugcgauuucuauuaugacauaaaauacguuuuggauuuuaaaacacuugacCUUCUUAAGUGCUGAUAAUGCuucuuuc
(((.((((((((((((((((((((((.((.(((((..((((......(((((((.((((((((((((.((((.(((((.(((((((((((.........))))))))))).))))).)))).)))))))))))).))))))).....))))......))))).)).))))))))))))))))))))))..)))

Structure

   -u                      U  a     ----au    agcuau       c            u    a     g           gag 
gaa  aagcAUUGUCGGCACUUGAGAA GU aagug      gauc      cguauuu augucguaauag aguc cguua ggugauauaac   g
|||  |||||||||||||||||||||| || |||||      ||||      ||||||| |||||||||||| |||| ||||| |||||||||||   c
cuu  uuCGUAAUAGUCGUGAAUUCUU ca uucac      uuag      gcauaaa uacaguauuauc uuag gugau cuacuauauug   g
   uc                      C  g     aaaauu    -guuuu       a            u    c     a           aga 

Annotation confidence High

Genome context

chr3: 6488234-6488426 [+]

Mature ath-miR868-5p

• Accession: MIMAT0020355
• Description: Arabidopsis thaliana ath-miR868-5p mature miRNA
• Sequence: 9 - AUUGUCGGCACUUGAGAAUGU - 29
• Evidence: experimental ; Illumina [2]

Mature ath-miR868-3p

• Accession: MIMAT0004319
• Description: Arabidopsis thaliana ath-miR868-3p mature miRNA
• Sequence: 166 - CUUCUUAAGUGCUGAUAAUGC - 186
• Evidence: experimental ; 454 [1], cloned [1]

References

1. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219


2. PubMed ID: 21357774
   MicroRNA activity in the Arabidopsis male germline
   "Borges F, Pereira PA, Slotkin RK, Martienssen RA, Becker JD"
   "J Exp Bot (2011) 62:1611-1620