Accession
MI0001085
Description
Arabidopsis thaliana
ath-MIR159c precursor miRNA
Literature search
49 open access papers mention ath-MIR159c
(440 sentences)
(440 sentences)
Sequence
21037246
reads,
47938.0
reads per million, 185 experiments
guguaacagaaggAGCUCCCUUCCUCCAAAACGaagaggacaagauuugaggaacuaaaaugcagaaucuaagaguucaugucuuccucauagagagugcgcgguguuaaaagcuugaagaaagcacacuuuaaggggauugcacgaccucuuagauucucccucuuucucuacauaucauucucuucucuucgUUUGGAUUGAAGGGAGCUCCuuuucuucuuc
.......((((((((((((((((.((((((.(((((((((.(((((.((.(((........(.((((((((((((.((.(((..(((((.(((((.((((......((((....)))).....)))).))))).)))))..))).)).)))))))))))))........))).)).))).))...)))))))))))))))..)))))))))))))))).......
.......((((((((((((((((.((((((.(((((((((.(((((.((.(((........(.((((((((((((.((.(((..(((((.(((((.((((......((((....)))).....)))).))))).)))))..))).)).)))))))))))))........))).)).))).))...)))))))))))))))..)))))))))))))))).......
Structure
guguaac -C A --c - u a acuaaaau c u a cu a a gcggug a
agaaggAGCUCCCUUC UCCAAA CGaagagga aa gau ug gga g agaaucuaagag uc ugu uccuc uagag gugc uuaa a
|||||||||||||||| |||||| ||||||||| || ||| || ||| | |||||||||||| || ||| ||||| ||||| |||| ||||
uuuuCCUCGAGGGAAG AGGUUU gcuucucuu uu cua ac ucu c ucuuagauucuc ag acg agggg auuuc cacg aguu g
cuucuuc UU - cuc a u a cuuucucc - c c uu a a -aaaga c
Annotation confidence
High
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and TCP transcription factors.
Genome context
chr2: 18994632-18994856 [+]
Database links
Mature ath-miR159c-5p
| Accession | MIMAT0053845 |
| Description | Arabidopsis thaliana ath-miR159c-5p mature miRNA |
| Sequence | 14 - AGCUCCCUUCCUCCAAAACG - 33 |
| Evidence |
experimental
unknown |
Mature ath-miR159c-3p
| Accession | MIMAT0001015 |
| Description | Arabidopsis thaliana ath-miR159c-3p mature miRNA |
| Sequence | 195 - UUUGGAUUGAAGGGAGCUCC - 214 |
| Evidence |
experimental
454 [2] |
References
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