Stem-loop ath-MIR853

Accession

MI0005408

Description

Arabidopsis thaliana ath-MIR853 precursor miRNA

Literature search

1 open access papers mention ath-MIR853
(2 sentences)

Sequence

9590 reads, 46.0 reads per million, 169 experiments

gagaggaacaauuaggguuguuucaaacaggguaaaguguuccugcugcUCCCCUCUUUAGCUUGGAGAAGccaguaaauaucuuucucuucaaggaacuugugggccucaagaaaaccugcuauaauucuaguuuuucaacauuccuccuucugauaucagcaacaacuccuuacccuuaagaauggagaauggaacuuccucaaagauauuuacuuggccUCUGCAACCGGAAAGGGGAGCAGcaugaaacucuuuuaacccuuacccuguauuugucaaaaacagau
....((((((((....))))))))..((((((((((((.(((.((((((((((((.(((.(.(((.(((.((((((((((((((((.......(((..(....)..)))...(((((...((((......)))))))))..(((((.(((((((...........................)))).))))))))..........)))))))))))).)))).))).)))).))).)))))))))))).))))))..........)))))))))((((((.....))))))

Structure

gagaggaacaauuaggguuguuucaa         ----------   g   c            C   A C   G   A    -            cucuucaaggaacuugugggccucaagaaaaccugcuauaauucuaguuuuucaa     c   -    gauaucagcaac 
                          acaggguaa          agu uuc ugcugcUCCCCU UUU G UUG AGA Gcca guaaauaucuuu                                                       cauuc ucc uucu            a
                          |||||||||          ||| ||| |||||||||||| ||| | ||| ||| |||| ||||||||||||                                                       ||||| ||| ||||            a
                          ugucccauu          uca aag acGACGAGGGGA AGG C AAC UCU cggu cauuuauagaaa                                                       guaag agg aaga            c
---------uagacaaaaacuguuua         cccaauuuuc   -   u            A   C -   G   c    u            ---------------------------------------------cuccuucaag     -   u    auucccauuccu 

Annotation confidence High

Genome context

chr3: 8346367-8346656 [+]

Mature ath-miR853-5p

• Accession: MIMAT0004276
• Description: Arabidopsis thaliana ath-miR853-5p mature miRNA
• Sequence: 50 - UCCCCUCUUUAGCUUGGAGAAG - 71
• Evidence: experimental ; 454 [1], cloned [2]

Mature ath-miR853-3p

• Accession: MIMAT0053876
• Description: Arabidopsis thaliana ath-miR853-3p mature miRNA
• Sequence: 223 - UCUGCAACCGGAAAGGGGAGCAG - 245
• Evidence: experimental ; unknown

References

1. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


2. PubMed ID: 17299599
   High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes
   Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC
   PLoS One (2007) 2:e219