Stem-loop ath-MIR774b

Accession

MI0014668

Description

Arabidopsis thaliana ath-MIR774b precursor miRNA

Literature search

2 open access papers mention ath-MIR774b
(7 sentences)

Sequence

gaguguugauuauauggauucauuUGAGAUGAAGAUAUGGGUGAUgaucaaugcuuacgauuuuggucaauuuauguuagcaauuuaauucuuuuuCAUCCAUAUUUUCAUCUCGAAuuuaaucuuuaaaaaagcguuu
....(((........(((((.((((((((((((((((((((((((((((((...........)))))))..........................)))))))))))))))))))))))..))))).......)))....

Structure

gagu   gauuauau     -c                       --------------------------       ugcu 
    guu        ggauu  auuUGAGAUGAAGAUAUGGGUGA                          Ugaucaa    u
    |||        |||||  |||||||||||||||||||||||                          |||||||    a
    cga        ucuaa  uAAGCUCUACUUUUAUACCUACu                          acugguu    c
uuug   -aaaaauu     uu                       uuuucuuaauuuaacgauuguauuua       uuag 

Annotation confidence Not enough data

Genome context

chr1: 22150128-22150266 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ath-MIR774b

Mature ath-miR774b-5p

• Accession: MIMAT0017739
• Description: Arabidopsis thaliana ath-miR774b-5p mature miRNA
• Sequence: 25 - UGAGAUGAAGAUAUGGGUGAU - 45
• Evidence: experimental ; Illumina [1]

Mature ath-miR774b-3p

• Accession: MIMAT0017740
• Description: Arabidopsis thaliana ath-miR774b-3p mature miRNA
• Sequence: 97 - CAUCCAUAUUUUCAUCUCGAA - 117
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089