Stem-loop ath-MIR164a

Accession

MI0000197

Description

Arabidopsis thaliana ath-MIR164a precursor miRNA

Literature search

46 open access papers mention ath-MIR164a
(272 sentences)

Sequence

345327 reads, 1288.0 reads per million, 183 experiments

gggugagaaucuccauguUGGAGAAGCAGGGCACGUGCAAACcaacaaacacgaaauccgucucauuugcuuauuugCACGUACUUAACUUCUCCAACAugagcucuucaccc
(((((((...(((.((((((((((((..(((.(((((((((....((((.(((.....)))....))))....))))))))).)))..)))))))))))))))...)))))))

Structure

       aau   c            CA   C         Ccaa    ---c   a 
gggugag   cuc auguUGGAGAAG  GGG ACGUGCAAA    caaa    acg a
|||||||   ||| ||||||||||||  ||| |||||||||    ||||    ||| a
cccacuu   gag uACAACCUCUUC  UUC UGCACguuu    guuu    ugc u
       cuc   -            AA   A         auuc    acuc   c 

Annotation confidence High

Comments

MIR164a is thought to target mRNAs coding for NAC domain containing proteins such as Cup-Shaped Cotyledon 2 (CUC2) which is required for shoot apical meristem formation [2].

Genome context

chr2: 19520752-19520864 [+]

Mature ath-miR164a-5p

• Accession: MIMAT0000185
• Description: Arabidopsis thaliana ath-miR164a-5p mature miRNA
• Sequence: 19 - UGGAGAAGCAGGGCACGUGCAAAC - 42
• Evidence: experimental ; cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6]

Mature ath-miR164a-3p

• Accession: MIMAT0053797
• Description: Arabidopsis thaliana ath-miR164a-3p mature miRNA
• Sequence: 78 - CACGUACUUAACUUCUCCAACA - 99
• Evidence: experimental ; unknown

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 12202040
   Prediction of plant microRNA targets
   "Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP"
   "Cell (2002) 110:513-520


3. PubMed ID: 16040653
   Expression of Arabidopsis MIRNA genes
   "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
   "Plant Physiol (2005) 138:2145-2154


4. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


5. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


6. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177