Accession
MI0000203
Description
Arabidopsis thaliana
ath-MIR166c precursor miRNA
Literature search
37 open access papers mention ath-MIR166c
(298 sentences)
(298 sentences)
Sequence
38688182
reads,
116652.0
reads per million, 185 experiments
gcgauuuaguguugagaGGAUUGUUGUCUGGCUCGAGGucaugaagaagagaaucacucgaauuaauuuggaagaacaaauuaagaaaacccuagaugauucUCGGACCAGGCUUCAUUCCCCcuaaccuacuuaucgc
(((((.(((.((((.(.(((.((..((((((.((((((((((..((..(((.....)))...((((((((......)))))))).......))..)))).)))))).))))))..)).))).).)))))))...)))))
(((((.(((.((((.(.(((.((..((((((.((((((((((..((..(((.....)))...((((((((......)))))))).......))..)))).)))))).))))))..)).))).).)))))))...)))))
Structure
--u u a a U UU C - ga aagagaaucacucgaa ga
gcgau uag guug g GGA UG GUCUGG UCGAGG ucau ag uuaauuug a
||||| ||| |||| | ||| || |||||| |||||| |||| || ||||||||
cgcua auc caau C CCU AC CGGACC GGCUcu agua uc aauuaaac g
uuc - c C U UU A u ga ---------ccaaaag aa
Annotation confidence
High
Do you think this miRNA is real?
Comments
MIR166c, like miR165, is thought to target mRNAs coding for HD-Zip transcription factors including Phabulosa (PHB) and Phavoluta (PHV) that regulate axillary meristem initiation and leaf development [2].
Genome context
chr5: 2838635-2838773 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR166c
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR166c-5p
| Accession | MIMAT0053799 |
| Description | Arabidopsis thaliana ath-miR166c-5p mature miRNA |
| Sequence | 18 - GGAUUGUUGUCUGGCUCGAGG - 38 |
| Evidence |
experimental
unknown |
Mature ath-miR166c-3p
| Accession | MIMAT0000191 |
| Description | Arabidopsis thaliana ath-miR166c-3p mature miRNA |
| Sequence | 103 - UCGGACCAGGCUUCAUUCCCC - 123 |
| Evidence |
experimental
cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
References
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