Accession
MI0000215
Description
Arabidopsis thaliana
ath-MIR172a precursor miRNA
Literature search
68 open access papers mention ath-MIR172a
(373 sentences)
(373 sentences)
Sequence
512343
reads,
3112.0
reads per million, 184 experiments
ugcuGUGGCAUCAUCAAGAUUCACAucuguugauggacgguggugauucacucuccacaaaguucucuaugaaaaugAGAAUCUUGAUGAUGCUGCAUcggc
((.(((((((((((((((((((.(((...(((.((((.(((((....))))).)))))))..(((.....))).))).))))))))))))))))))).))..
((.(((((((((((((((((((.(((...(((.((((.(((((....))))).)))))))..(((.....))).))).))))))))))))))))))).))..
Structure
-- c A -----------cug a c u ug uGUGGCAUCAUCAAGAUUC CAu uug ugga ggugg g || ||||||||||||||||||| ||| ||| |||| ||||| gc ACGUCGUAGUAGUUCUAAG gua aac accu ucacu a cg U A aaaguaucucuuga - c u
Annotation confidence
High
Do you think this miRNA is real?
Comments
This sequence was independently identified by two groups. Park et al. described miR172a1, found on chromosome 2 in Arabidopsis thaliana and thought to target mRNAs coding for Apetala 2 (AP2) proteins, and miR172a2 (MIR:MI0000216) [1]. These sequences have been renamed miR172a and miR172b here to match previous plant miRNA nomenclature. This sequence was referred to by Mette et al. by the internal identifier MIR123a [2], and was previously identified as MIR180a here. This sequence is not related to mouse miR-123.
Genome context
chr2: 11942914-11943015 [-]
Database links
Mature ath-miR172a-5p
| Accession | MIMAT0053804 |
| Description | Arabidopsis thaliana ath-miR172a-5p mature miRNA |
| Sequence | 5 - GUGGCAUCAUCAAGAUUCACA - 25 |
| Evidence |
experimental
unknown |
Mature ath-miR172a-3p
| Accession | MIMAT0000203 |
| Description | Arabidopsis thaliana ath-miR172a-3p mature miRNA |
| Sequence | 78 - AGAAUCUUGAUGAUGCUGCAU - 98 |
| Evidence |
experimental
cloned [1-2], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
References
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