Stem-loop ath-MIR782

Accession

MI0005112

Description

Arabidopsis thaliana ath-MIR782 precursor miRNA

Literature search

2 open access papers mention ath-MIR782
(2 sentences)

Sequence

117 reads, 4.0 reads per million, 58 experiments

aaccuuuuucuACAAACACCUUGGAUGUUCUUuaaauaagaugaaaaggcuauuauucuaaugaacaacaugaagccaaaagaaaaUCCAAGGCGUUUGCAGAAAGAGguu
(((((((((((.(((((.((((((((.((((((..............((((.((((((....)).....)))))))).)))))).)))))))).))))).)))))))))))

Structure

           A     A        G      aaauaagaugaaaa    a    -----  u 
aaccuuuuucu CAAAC CCUUGGAU UUCUUu              ggcu uuau     uc a
||||||||||| ||||| |||||||| ||||||              |||| ||||     ||  
uugGAGAAAGA GUUUG GGAACCUa aagaaa              ccga agua     ag a
           C     C        a      -------------a    -    caaca  u 

Annotation confidence Medium

Genome context

chr3: 5500037-5500147 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ath-MIR782

Mature ath-miR782-5p

• Accession: MIMAT0003941
• Description: Arabidopsis thaliana ath-miR782-5p mature miRNA
• Sequence: 12 - ACAAACACCUUGGAUGUUCUU - 32
• Evidence: experimental ; MPSS [1], Northern [1]

Mature ath-miR782-3p

• Accession: MIMAT0053859
• Description: Arabidopsis thaliana ath-miR782-3p mature miRNA
• Sequence: 87 - UCCAAGGCGUUUGCAGAAAGAG - 108
• Evidence: experimental ; unknown

References

1. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288