Accession
MI0000179
Description
Arabidopsis thaliana
ath-MIR156b precursor miRNA
Literature search
79 open access papers mention ath-MIR156b
(773 sentences)
(773 sentences)
Sequence
gcuagaagagggagagauggugauugaggaaugcaacagagaaaacUGACAGAAGAGAGUGAGCACaugcaggcacuguuaugugucuauaacuuugcgugugcgUGCUCACCUCUCUUUCUGUCAGUugccuaucucugccugcuugaccucucucucucucucucucucucaaauuuggcu
(((((((((((((((((.((.((..((((...(((.((((((.(((((((((((((((((((((((.((((.(((..((((((....))))))..))).)))).))))))).))))).))))))))))).....))))))..)))....))))..)).)).)))))))))))....)))))).
(((((((((((((((((.((.((..((((...(((.((((((.(((((((((((((((((((((((.((((.(((..((((((....))))))..))).)))).))))))).))))).))))))))))).....))))))..)))....))))..)).)).)))))))))))....)))))).
Structure
- ---- u u uu -aau -a ----a - - a g cu u gcuaga agagggagaga gg ga gagg gca cagaga aacUGACAGAA GAGAG UGAGCAC ugca gca guuaug g |||||| ||||||||||| || || |||| ||| |||||| ||||||||||| ||||| ||||||| |||| ||| |||||| cgguuu ucucucucucu uc cu cucc cgu gucucu uUGACUGUCUU CUCUC ACUCGUg gugu cgu caauau u u aaac c u cu aguu cc auccg U C c g uu c
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
MIR156b is thought to target 10 mRNAs coding for proteins containing the Squamosa-promoter Binding Protein (SBP) box [1]. The complementary sites are downstream of this conserved domain, within a poorly conserved protein-coding context or the 3' UTR [2].
Genome context
chr4: 15074899-15075081 [+]
Database links
Mature ath-miR156b-5p
| Accession | MIMAT0000167 |
| Description | Arabidopsis thaliana ath-miR156b-5p mature miRNA |
| Sequence | 47 - UGACAGAAGAGAGUGAGCAC - 66 |
| Evidence |
experimental
cloned [1,3], Northern [1], 454 [4-5], MPSS [4], Illumina [6] |
Mature ath-miR156b-3p
| Accession | MIMAT0031866 |
| Description | Arabidopsis thaliana ath-miR156b-3p mature miRNA |
| Sequence | 106 - UGCUCACCUCUCUUUCUGUCAGU - 128 |
| Evidence | not_experimental |
References
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