Accession
MI0000204
Description
Arabidopsis thaliana
ath-MIR166d precursor miRNA
Literature search
37 open access papers mention ath-MIR166d
(300 sentences)
(300 sentences)
Sequence
38624165
reads,
116470.0
reads per million, 185 experiments
gguugagaGGAAUAUUGUCUGGCUCGAGGUcaugaagaagaucgguagauugauucauuuuaaagagugaaaucccuaaaugauucUCGGACCAGGCUUCAUUCCCCccaacc
(((((.(.(((((...((((((.((((((((((..((..((((....))))(((((((((....))))).)))).))..)))).)))))).))))))...))))).).)))))
(((((.(.(((((...((((((.((((((((((..((..((((....))))(((((((((....))))).)))).))..)))).)))))).))))))...))))).).)))))
Structure
a a AUU C - ga aagaucgguagauu - u
gguug g GGAAU GUCUGG UCGAGG Ucau ag gauu cauuu a
||||| | ||||| |||||| |||||| |||| || |||| |||||
ccaac C CCUUA CGGACC GGCUcu agua uc cuaa gugag a
c C CUU A u aa -------------c a a
Annotation confidence
High
Do you think this miRNA is real?
Comments
MIR166d, like miR165, is thought to target mRNAs coding for HD-Zip transcription factors including Phabulosa (PHB) and Phavoluta (PHV) that regulate axillary meristem initiation and leaf development [2].
Genome context
chr5: 2840622-2840734 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR166d
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR166d-5p
| Accession | MIMAT0053800 |
| Description | Arabidopsis thaliana ath-miR166d-5p mature miRNA |
| Sequence | 9 - GGAAUAUUGUCUGGCUCGAGGU - 30 |
| Evidence |
experimental
unknown |
Mature ath-miR166d-3p
| Accession | MIMAT0000192 |
| Description | Arabidopsis thaliana ath-miR166d-3p mature miRNA |
| Sequence | 87 - UCGGACCAGGCUUCAUUCCCC - 107 |
| Evidence |
experimental
cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
References
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