Accession
MI0000200
Description
Arabidopsis thaliana
ath-MIR165b precursor miRNA
Literature search
44 open access papers mention ath-MIR165b
(238 sentences)
(238 sentences)
Sequence
16433202
reads,
41961.0
reads per million, 185 experiments
ugaagaggcuauuucuguuguggGGAAUGUUGUUUGGAUCGAGGAuaucauaaacgcauacacauguuuauauguuaugaugcauuauaugacugauguaauguacauauauauacauacaugccacaugguaucgUCGGACCAGGCUUCAUCCCCCUcaacauguuaauugccuucaauca
(((.(((((.(((.((((((.((((.(((..((((((.((((.((((((((....((((....((((..((((((.(((.((((((((((.....)))))))))))))))))))))))..))))...)))))))).)))).))))))..))).)))).))))).)..))).)))))...)))
(((.(((((.(((.((((((.((((.(((..((((((.((((.((((((((....((((....((((..((((((.(((.((((((((((.....)))))))))))))))))))))))..))))...)))))))).)))).))))))..))).)))).))))).)..))).)))))...)))
Structure
--a u -u - u A UU A G aaac acac uu u a g uga gaggc auu c uguug ggGG AUG GUUUGG UCGA GAuaucau gcau augu auaugu aug ugcauuauau a ||| ||||| ||| | ||||| |||| ||| |||||| |||| |||||||| |||| |||| |||||| ||| |||||||||| c acu uuccg uaa g acaac CCCC UAC CGGACC GGCU cuauggua cgua uaca uauaua uac auguaaugua u aac u uu u U C UU A g -cac --ca -- - - g
Annotation confidence
High
Do you think this miRNA is real?
Comments
MIR165b is thought to target mRNAs coding for HD-Zip transcription factors including Phabulosa (PHB) and Phavoluta (PHV) that regulate axillary meristem initiation and leaf development [2].
Genome context
chr4: 369831-370012 [-]
Database links
Mature ath-miR165b-5p
| Accession | MIMAT0053798 |
| Description | Arabidopsis thaliana ath-miR165b-5p mature miRNA |
| Sequence | 24 - GGAAUGUUGUUUGGAUCGAGGA - 45 |
| Evidence |
experimental
unknown |
Mature ath-miR165b-3p
| Accession | MIMAT0000188 |
| Description | Arabidopsis thaliana ath-miR165b-3p mature miRNA |
| Sequence | 137 - UCGGACCAGGCUUCAUCCCCCU - 158 |
| Evidence |
experimental
cloned [1,3], Northern [1], 454 [4-5], MPSS [4], Illumina [6] |
References
|
