Accession
MI0001021
Description
Arabidopsis thaliana
ath-MIR399b precursor miRNA
Literature search
38 open access papers mention ath-MIR399b
(197 sentences)
(197 sentences)
Sequence
129607
reads,
664.0
reads per million, 184 experiments
ucacuaguuuuaGGGCGCCUCUCCAUUGGCAGGuccuuuacuuccaaauauacacauacauauaugaauaucgaaaauuuccgaugaucgauuuauaaaugaccUGCCAAAGGAGAGUUGCCCUGAAacugguuc
..(((((((((((((((.((((((.((((((((((.((((.......(((((........)))))((.(((((........))))).))......)))).)))))))))).)))))).)))))))))))))))..
..(((((((((((((((.((((((.((((((((((.((((.......(((((........)))))((.(((((........))))).))......)))).)))))))))).)))))).)))))))))))))))..
Structure
uc C A c cuuccaaauauacacauacauauau a aaa acuaguuuuaGGGCG CUCUCC UUGGCAGGuc uuua ga uaucg a ||||||||||||||| |||||| |||||||||| |||| || ||||| uggucaAAGUCCCGU GAGAGG AACCGUccag aaau cu guagc u cu U A u -------------------auuuag a cuu
Annotation confidence
High
Do you think this miRNA is real?
Comments
This sequence belongs to the miR399 family of miRNAs, which are predicted to target mRNAs coding for a phosphatase transporter [1].
Genome context
chr1: 23345377-23345511 [-]
Database links
Mature ath-miR399b-5p
| Accession | MIMAT0053829 |
| Description | Arabidopsis thaliana ath-miR399b-5p mature miRNA |
| Sequence | 13 - GGGCGCCUCUCCAUUGGCAGG - 33 |
| Evidence |
experimental
unknown |
Mature ath-miR399b-3p
| Accession | MIMAT0000952 |
| Description | Arabidopsis thaliana ath-miR399b-3p mature miRNA |
| Sequence | 105 - UGCCAAAGGAGAGUUGCCCUGAA - 127 |
| Evidence |
experimental
PCR [1], cloned [2-3], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
References
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