Accession
MI0001019
Description
Arabidopsis thaliana
ath-MIR398c precursor miRNA
Literature search
30 open access papers mention ath-MIR398c
(122 sentences)
(122 sentences)
Sequence
uggaucucgacAGGGUUGAUAUGAGAACACACgagcaaucaacggcuauaacgacgcuacgucauuguuacagcucucguuucaUGUGUUCUCAGGUCACCCCUGcugagcucuu
.(((.((((.(((((.((((.((((((((((((((........((((.((((((((...))))...)))).))))))))).....))))))))).)))).))))).)))).))).
.(((.((((.(((((.((((.((((((((((((((........((((.((((((((...))))...)))).))))))))).....))))))))).)))).))))).)))).))).
Structure
u u a U A ----- caaucaac a --- c gga cucg cAGGG UGAU UGAGAACAC ACgag ggcu uaac gacg ||| |||| ||||| |||| ||||||||| ||||| |||| |||| |||| u ucu gagu GUCCC ACUG ACUCUUGUG ugcuc ucga auug cugc u c c C G Uacuu -------- c uua a
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence belongs to the miR398 family of miRNAs, which are predicted to target mRNAs coding for copper superoxide dismutases and cytochrome C oxidase subunit V [1].
Genome context
chr5: 4694694-4694808 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR398c
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR398c-3p
| Accession | MIMAT0000950 |
| Description | Arabidopsis thaliana ath-miR398c-3p mature miRNA |
| Sequence | 85 - UGUGUUCUCAGGUCACCCCUG - 105 |
| Evidence |
experimental
5'RACE [1,3], Northern [1-2], PCR [1], cloned [2-3], 454 [4-5], MPSS [4] |
Mature ath-miR398c-5p
| Accession | MIMAT0031912 |
| Description | Arabidopsis thaliana ath-miR398c-5p mature miRNA |
| Sequence | 12 - AGGGUUGAUAUGAGAACACAC - 32 |
| Evidence | not_experimental |
References
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