miRBase entry: ath-MIR169d

Stem-loop ath-MIR169d

Arabidopsis thaliana ath-MIR169d precursor miRNA
Gene family
MIPF0000037; MIR169_2

Literature search
34 open access papers mention ath-MIR169d
(163 sentences)



     a      c   -   g     auu      u     U         AU         augu      ca    uu 
guauc uagagu uug cau gaaaa   aaagaa gagau GAGCCAAGG  GACUUGCCG    uaucaa  aauc  a
||||| |||||| ||| ||| |||||   |||||| ||||| |||||||||  |||||||||    ||||||  ||||   
uauag aucuca aac gua cuuuu   uuucuu cuuug cucgguucc  uugaacggc    gugguu  uuag  a
     -      -   u   a     -cu      c     u         ag         --cu      --    uc 

Annotation confidence Not enough data
Do you think this miRNA is real?
This sequence is a predicted paralogue of the previously identified miR169 family [1], later experimentally verified [2]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context
chr1: 20039463-20039616 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR169d
Name Accession Chromosome Start End Strand Confidence

Database links

Mature ath-miR169d

Accession MIMAT0000908
Description Arabidopsis thaliana ath-miR169d mature miRNA
Evidence experimental
cloned [2], 454 [3-4], MPSS [3], Illumina [5]


  1. PubMed ID: 16040653
    Expression of Arabidopsis MIRNA genes
    "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
    "Plant Physiol (2005) 138:2145-2154

  2. PubMed ID: 16954541
    MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
    "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
    "Genome Res (2006) 16:1276-1288

  3. PubMed ID: 17182867
    A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
    "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
    "Genes Dev (2006) 20:3407-3425

  4. PubMed ID: 19815687
    Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
    "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
    "J Exp Bot (2010) 61:165-177

  5. PubMed ID: 15200956
    Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
    "Jones-Rhoades MW, Bartel DP"
    "Mol Cell (2004) 14:787-799