Stem-loop ath-MIR169h

Accession

MI0000982

Description

Arabidopsis thaliana ath-MIR169h precursor miRNA

Literature search

34 open access papers mention ath-MIR169h
(162 sentences)

Sequence

ucauauaagagaaaauggugacaugaagaaugagaacuuguguggUAGCCAAGGAUGACUUGCCUGcguuuuagaccauauauaucaaagacucacucgaucgauagucuuagaguugguuggucgucaggcagucuccuuggcuauucaaacaauucucauucucuucauucacauuucucuuuuuugg
.((...((((((((...((((.((((((((((((((.((((.(((((((((((((.((((.(((((.......(((((..((..((.((((((...((....)).)))))).))..))..)))))..))))))))))))))))))).))).)))))))))))..))))))))))).))))))))...)).

Structure

u  uau        aug    c       --       c    g   -          U    U     cguuuua     ua  ua  a      cac  g 
 ca   aagagaaa   guga augaaga  augagaa uugu ugg UAGCCAAGGA GACU GCCUG       gacca  ua  uc aagacu   uc a
 ||   ||||||||   |||| |||||||  ||||||| |||| ||| |||||||||| |||| |||||       |||||  ||  || ||||||   ||  
 gu   uucucuuu   cacu uacuucu  uacucuu aaca acu aucgguuccu cuga cggac       cuggu  gu  ag uucuga   ag u
g  uuu        --a    -       cu       -    a   u          -    -     -----ug     ug  ug  a      --u  c 

Annotation confidence Not enough data

Comments

This sequence is a predicted paralogue of the previously identified miR169 family [1], later experimentally verified [2,3]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors.

Genome context

chr1: 6695420-6695609 [-]

Mature ath-miR169h

• Accession: MIMAT0000913
• Description: Arabidopsis thaliana ath-miR169h mature miRNA
• Sequence: 46 - UAGCCAAGGAUGACUUGCCUG - 66
• Evidence: experimental ; 5'RACE [2], cloned [2], 454 [3-4], MPSS [3], Illumina [5]

References

1. PubMed ID: 16040653
   Expression of Arabidopsis MIRNA genes
   "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
   "Plant Physiol (2005) 138:2145-2154


2. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


3. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


4. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177


5. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799