Stem-loop ath-MIR169a

Accession

MI0000212

Description

Arabidopsis thaliana ath-MIR169a precursor miRNA

Literature search

35 open access papers mention ath-MIR169a
(184 sentences)

Sequence

gugacgaaaguagugugCAGCCAAGGAUGACUUGCCGAuuuaaaugaucuuucuuuauacucuauuaagacaauuuaguuucaaacuuuuuuuuuuuuuuuuuuuugaaggauucaggaagaaauuaggauauauuauuccguauaaaauacaagauauauaaaaccaaaaagaaaaaguaacaugaucGGCAAGUUGUCCUUGGCUACacguuacuuugugucgc
(((((((((((((((((.(((((((((((((((((((((((((((..((((...............))))..))))).......(((((((((((((((((((((((((...))))))))))))...(((........)))((((...))))...............))))))))))))).....)))))))))))))))))))))).))))))))))).))))))

Structure

      -           C                      uaaaugaucuuucuuuauacucuauuaagacaauuuaguuucaa             -------------------------------------------            g 
gugacg aaaguagugug AGCCAAGGAUGACUUGCCGAuu                                            acuuuuuuuuuuu                                           uuuuuuuuugaa  
|||||| ||||||||||| ||||||||||||||||||||||                                            |||||||||||||                                           |||||||||||| g
cgcugu uuucauugcaC UCGGUUCCUGUUGAACGGcuag                                            ugaaaaagaaaaa                                           aaagaaggacuu  
      g           A                      ---------------------------------------uacaa             ccaaaauauauagaacauaaaauaugccuuauuauauaggauu            a 

Annotation confidence Not enough data

Comments

MIR169 is thought to target mRNAs coding for CCAAT binding factor (CBF)-HAP2-like proteins [2].

Genome context

chr3: 4358994-4359219 [-]

Mature ath-miR169a-5p

• Accession: MIMAT0000200
• Description: Arabidopsis thaliana ath-miR169a-5p mature miRNA
• Sequence: 18 - CAGCCAAGGAUGACUUGCCGA - 38
• Evidence: experimental ; cloned [1,3], Northern [1], 5'RACE [3], 454 [4-5], MPSS [4], Illumina [6]

Mature ath-miR169a-3p

• Accession: MIMAT0031886
• Description: Arabidopsis thaliana ath-miR169a-3p mature miRNA
• Sequence: 190 - GGCAAGUUGUCCUUGGCUAC - 209
• Evidence: not_experimental

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 12202040
   Prediction of plant microRNA targets
   "Rhoades MW, Reinhart BJ, Lim LP, Burge CB, Bartel B, Bartel DP"
   "Cell (2002) 110:513-520


3. PubMed ID: 16040653
   Expression of Arabidopsis MIRNA genes
   "Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC"
   "Plant Physiol (2005) 138:2145-2154


4. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


5. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


6. PubMed ID: 19815687
   Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis
   "Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW"
   "J Exp Bot (2010) 61:165-177