Accession
MI0000991
Description
Arabidopsis thaliana
ath-MIR172c precursor miRNA
Gene family
MIPF0000035;
MIR172
Literature search
55 open access papers mention ath-MIR172c
(302 sentences)
(302 sentences)
Sequence
agcuacuguucgcuguuggagcaucaucaagauucacaaaucaucaaguauucguguaaauaaacccauuuaugauuagauuuuugauguauguaugAGAAUCUUGAUGAUGCUGCAGcugcaaucaguggcu
((((((((...((.((((.(((((((((((((((((((...(((((((.(((..(((((((......)))))))....))).)))))))..)))....)))))))))))))))).)))).))...))))))))
((((((((...((.((((.(((((((((((((((((((...(((((((.(((..(((((((......)))))))....))).)))))))..)))....)))))))))))))))).)))).))...))))))))
Structure
uuc u g ---- aau u --cg aa
agcuacug gc guug agcaucaucaagauuc aca caucaag auu uguaaau a
|||||||| || |||| |||||||||||||||| ||| ||||||| ||| |||||||
ucggugac cg cGAC UCGUAGUAGUUCUAAG ugu guaguuu uag guauuua c
uaa u G Agua -au u auua cc
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR172 family [1], later experimentally verified [2]. It is predicted to target mRNAs coding for APETALA2-like transcription factors.
Genome context
chr3: 3599776-3599908 [-]
Database links
Mature ath-miR172c
| Accession | MIMAT0000922 |
| Description | Arabidopsis thaliana ath-miR172c mature miRNA |
| Sequence | 98 - AGAAUCUUGAUGAUGCUGCAG - 118 |
| Evidence |
experimental
5'RACE [2], cloned [2], 454 [3-4], MPSS [3], Illumina [5] |
References
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