Stem-loop ath-MIR402

Accession

MI0001071

Description

Arabidopsis thaliana ath-MIR402 precursor miRNA

Literature search

8 open access papers mention ath-MIR402
(28 sentences)

Sequence

16235 reads, 81.0 reads per million, 173 experiments

cgugguagauaaguuugaguugcauaguggcagucuuccuuuguuuguuaacccauauuuucaugaUUCGAGGCCUAUUAAACCUCUGuuacaucugcuuuuugaaaaguugucauuuuucugaaaucuucuugccucaauuuccaacagcagauucaucuuucauuggaugauccguuaguuuuugauagaaaaaaugaggugggaagaaauuaagacugacuucgaaauagccuuuaaaauagggguuuauagaccucgaaucAUAUCAAACGAGUCUGCUACUAugcuacugaaaacuuuaucaaa
..(((((((....(((.(((.((((((((((((.(((.....(((((...............(((((((((((.((((.(((((((((((......((((((((((.....((((....(((....(((((((((((((.((((.((((((.(((.(((((......)))))))).))).))).......))))...))))))))))))).....))).))))))))))).)))......))))))))))))))).)))))))))))..)))))))).)))))))))))).))).)))..)))))))..

Structure

cg       uaag   g   u            u   ccuuu     uuaacccauauuuuc           C    U           acaucu   -       aaguu    uuuu   -gaaa             --a    ------c   -   a   u     uu 
  ugguaga    uuu agu gcauaguggcag cuu     guuug               augaUUCGAGG CUAU AAACCUCUGuu      gcu uuuugaa     guca    ucu     ucuucuugccuca   uuuc       aac agc gau caucu  c
  |||||||    ||| ||| |||||||||||| |||     |||||               ||||||||||| |||| |||||||||||      ||| |||||||     ||||    |||     |||||||||||||   ||||       ||| ||| ||| |||||   
  acuauuu    aaa uca cguAUCAUCGUC GAG     CAAAC               UAcuaagcucc gaua uuuggggauaa      cga aaagcuu     cagu    aga     agaaggguggagu   aaag       uug uug cua guagg  a
aa       --ca   g   u            U   -----     -------------UA           a    -           aauuuc   u       -----    ---c   auuaa             aaa    auaguuu   a   c   -     uu 

Annotation confidence Low

Genome context

chr1: 29016520-29016828 [+]

Mature ath-miR402-5p

• Accession: MIMAT0001003
• Description: Arabidopsis thaliana ath-miR402-5p mature miRNA
• Sequence: 67 - UUCGAGGCCUAUUAAACCUCUG - 88
• Evidence: experimental ; cloned [1], Northern [1], MPSS [2], 454 [3]

Mature ath-miR402-3p

• Accession: MIMAT0053835
• Description: Arabidopsis thaliana ath-miR402-3p mature miRNA
• Sequence: 266 - AUAUCAAACGAGUCUGCUACUA - 287
• Evidence: experimental ; unknown

References

1. PubMed ID: 16954541
   MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant
   "Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC"
   "Genome Res (2006) 16:1276-1288


2. PubMed ID: 17182867
   A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana
   "Rajagopalan R, Vaucheret H, Trejo J, Bartel DP"
   "Genes Dev (2006) 20:3407-3425


3. PubMed ID: 15258262
   Novel and stress-regulated microRNAs and other small RNAs from Arabidopsis
   "Sunkar R, Zhu JK"
   "Plant Cell (2004) 16:2001-2019