Accession
MI0000185
Description
Arabidopsis thaliana
ath-MIR157b precursor miRNA
Literature search
18 open access papers mention ath-MIR157b
(198 sentences)
(198 sentences)
Sequence
1780540
reads,
9368.0
reads per million, 185 experiments
ugggaggcauugauagugUUGACAGAAGAUAGAGAGCACAgaugauaagauacaauuccucgcagcuucuuugcaucuuacuccuuuguGCUCUCUAGCCUUCUGUCAUCAcccguuauuugccaucaccca
((((.((((.((((.(((.(((((((((.(((((((((((((.((((((((.(((...............))).)))))).)).)))))))))))))..))))))))).)))..))))..))))....))))
((((.((((.((((.(((.(((((((((.(((((((((((((.((((((((.(((...............))).)))))).)).)))))))))))))..))))))))).)))..))))..))))....))))
Structure
---a -u -a U -A u - a uuccuc
uggg ggca ugau gug UGACAGAAG UAGAGAGCACAga ga uaagau caa g
|||| |||| |||| ||| ||||||||| ||||||||||||| || |||||| ||| c
accc ccgu auug cAC ACUGUCUUC AUCUCUCGuguuu cu auucua guu a
acua uu cc U CG c c c ucuucg
Annotation confidence
High
Do you think this miRNA is real?
Comments
MIR157b is thought, like the miR156 family, to target mRNAs coding for proteins containing the Squamosa-promoter Binding Protein (SBP) box [2].
Genome context
chr1: 24921086-24921217 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from ath-MIR157b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature ath-miR157b-5p
| Accession | MIMAT0000173 |
| Description | Arabidopsis thaliana ath-miR157b-5p mature miRNA |
| Sequence | 19 - UUGACAGAAGAUAGAGAGCACA - 40 |
| Evidence |
experimental
cloned [1,3], Northern [1], 3'RACE [3], 454 [4-5], MPSS [4], Illumina [6] |
Mature ath-miR157b-3p
| Accession | MIMAT0031871 |
| Description | Arabidopsis thaliana ath-miR157b-3p mature miRNA |
| Sequence | 90 - GCUCUCUAGCCUUCUGUCAUCA - 111 |
| Evidence | not_experimental |
References
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