Accession
MI0000989
Description
Arabidopsis thaliana
ath-MIR171b precursor miRNA
Literature search
28 open access papers mention ath-MIR171b
(124 sentences)
(124 sentences)
Sequence
ugcaagguaacgcgAGAUAUUAGUGCGGUUCAAUCaaauagucguccucuuaacucauggagaacgguguuguucgaUUGAGCCGUGCCAAUAUCACGcgguaaaccaaaaauggca
.....(((..((((.((((((.(((((((((((((.(((((((((.((((........)))).))))..))))).))))))))))))).)))))).))))....)))..........
.....(((..((((.((((((.(((((((((((((.(((((((((.((((........)))).))))..))))).))))))))))))).)))))).))))....)))..........
Structure
-----ugcaa --aa A A a -- c uaa
ggu cgcg GAUAUU GUGCGGUUCAAUC aauag ucgu cucu c
||| |||| |||||| ||||||||||||| ||||| |||| ||||
cca gcGC CUAUAA CGUGCCGAGUUag uuguu ggca gagg u
acgguaaaaa aaug A C c gu a uac
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR171 family [1]. It is predicted to target mRNAs coding for SCARECROW-like transcription factors. Its expression in Arabidopsis was confirmed by cloning and Northern blot [2,3]. The mature sequence reported in [3] is offset by 4 nts with respect to the sequence shown here.
Genome context
chr1: 3961348-3961464 [-]
Database links
Mature ath-miR171b-3p
| Accession | MIMAT0000920 |
| Description | Arabidopsis thaliana ath-miR171b-3p mature miRNA |
| Sequence | 78 - UUGAGCCGUGCCAAUAUCACG - 98 |
| Evidence |
experimental
cloned [2,4], Northern [2-3], 5'RACE [4], 454 [5-6], MPSS [5] |
Mature ath-miR171b-5p
| Accession | MIMAT0031899 |
| Description | Arabidopsis thaliana ath-miR171b-5p mature miRNA |
| Sequence | 15 - AGAUAUUAGUGCGGUUCAAUC - 35 |
| Evidence | not_experimental |
References
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