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Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets |
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|---|---|
| PubMed ID | 15345049 |
| Authors | Wang XJ, Reyes JL, Chua NH, Gaasterland T |
| Journal | Genome Biol |
| Volume | 5 |
| Pages | R65 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| ath-MIR172b | MI0000216 | None | chr5 | 1188207 | 1188301 | - | - |
| ath-MIR169b | MI0000976 | None | chr5 | 8527469 | 8527649 | + | - |
| ath-MIR169g | MI0000981 | None | chr4 | 11482879 | 11483257 | - | - |
| ath-MIR171b | MI0000989 | None | chr1 | 3961348 | 3961464 | - | - |
| ath-MIR393a | MI0001003 | None | chr2 | 16652101 | 16652233 | + | - |
| ath-MIR396b | MI0001014 | None | chr5 | 13611798 | 13611932 | + | - |
| ath-MIR413 | MI0001424 | None | chr1 | 23058034 | 23058156 | + | - |
| ath-MIR414 | MI0001425 | None | chr1 | 25137456 | 25137563 | - | - |
| ath-MIR415 | MI0001426 | None | chr1 | 27987016 | 27987125 | + | - |
| ath-MIR416 | MI0001427 | None | chr2 | 7008520 | 7008599 | + | - |
| ath-MIR417 | MI0001428 | None | chr2 | 13708748 | 13708864 | - | - |
| ath-MIR418 | MI0001429 | None | chr3 | 6516218 | 6516290 | + | - |
| ath-MIR419 | MI0001430 | None | chr4 | 15660370 | 15660475 | + | - |
| ath-MIR420 | MI0001431 | None | chr5 | 25230568 | 25230667 | - | - |
| osa-MIR413 | MI0001433 | None | Chr12 | 10136381 | 10136493 | + | - |
| osa-MIR414 | MI0001434 | 0 | Chr11 | 15504891 | 15504996 | + | - |
| osa-MIR415 | MI0001435 | 0 | Chr12 | 26270477 | 26270620 | - | - |
| osa-MIR416 | MI0001436 | 0 | Chr4 | 17456166 | 17456274 | + | - |
| osa-MIR417 | MI0001437 | 0 | Chr8 | 14939853 | 14939918 | + | - |
| osa-MIR418 | MI0001438 | None | Chr2 | 35182622 | 35182703 | - | - |
| osa-MIR419 | MI0001439 | 0 | Chr12 | 8237520 | 8237622 | - | - |
| ath-MIR426 | MI0001441 | None | chr1 | 22107346 | 22107456 | + | - |
| osa-MIR426 | MI0001442 | 0 | Chr5 | 174006 | 174153 | + | - |
| ath-MIR158a | MI0000188 | None | chr3 | 3366331 | 3366430 | - | - |
| ath-MIR159a | MI0000189 | None | chr1 | 27713233 | 27713416 | - | - |
| ath-MIR162a | MI0000194 | None | chr5 | 2634905 | 2635044 | - | - |
| ath-MIR162b | MI0000195 | None | chr5 | 7740598 | 7740708 | - | - |
| ath-MIR169a | MI0000212 | None | chr3 | 4358994 | 4359219 | - | - |
| ath-MIR170 | MI0000213 | None | chr5 | 26411580 | 26411672 | - | - |
| osa-MIR162a | MI0000667 | 361 | Chr2 | 23605799 | 23605969 | + | - |
| osa-MIR169a | MI0000679 | 3953 | Chr1 | 8729104 | 8729276 | + | - |
| ath-MIR169c | MI0000977 | None | chr5 | 15870590 | 15871000 | - | - |
| ath-MIR169d | MI0000978 | None | chr1 | 20039463 | 20039616 | - | - |
| ath-MIR169e | MI0000979 | None | chr1 | 20041518 | 20041734 | + | - |
| ath-MIR169f | MI0000980 | None | chr3 | 4805684 | 4805850 | - | - |
| ath-MIR169h | MI0000982 | None | chr1 | 6695420 | 6695609 | - | - |
| ath-MIR169i | MI0000983 | None | chr3 | 9871960 | 9872165 | - | - |
| ath-MIR169j | MI0000984 | None | chr3 | 9872333 | 9872553 | - | - |
| ath-MIR169k | MI0000985 | None | chr3 | 9875525 | 9875737 | - | - |
| ath-MIR169l | MI0000986 | None | chr3 | 9875893 | 9876103 | - | - |
| ath-MIR169m | MI0000987 | None | chr3 | 9878168 | 9878379 | - | - |
| ath-MIR169n | MI0000988 | None | chr3 | 9878540 | 9878754 | - | - |
| osa-MIR393a | MI0001026 | 98 | Chr1 | 2309149 | 2309263 | - | - |
| ath-MIR158b | MI0001084 | None | chr1 | 20772218 | 20772302 | + | - |
| osa-MIR159a | MI0001092 | 1717 | Chr1 | 17681923 | 17682194 | + | - |
| osa-MIR162b | MI0001102 | 47 | Chr4 | 24405899 | 24406032 | + | - |
| osa-MIR169b | MI0001117 | 3267 | Chr6 | 27295908 | 27296035 | - | - |
| osa-MIR169c | MI0001118 | 3454 | Chr4 | 30712338 | 30712449 | - | - |
| osa-MIR169d | MI0001119 | 1 | Chr9 | 14620382 | 14620484 | - | - |
| osa-MIR169e | MI0001120 | 804 | Chr2 | 31205866 | 31205997 | - | - |
| osa-MIR169f | MI0001121 | 845 | Chr2 | 18558299 | 18558512 | - | - |
| osa-MIR169g | MI0001122 | 1008 | Chr4 | 19420077 | 19420202 | + | - |
| osa-MIR169h | MI0001123 | 1003 | Chr8 | 26807349 | 26807470 | + | - |
| osa-MIR169i | MI0001124 | 1053 | Chr8 | 26803116 | 26803291 | + | High |
| osa-MIR169j | MI0001125 | 1011 | Chr9 | 19788861 | 19788985 | + | - |
| osa-MIR169k | MI0001126 | 1016 | Chr9 | 19792133 | 19792288 | + | - |
| osa-MIR169l | MI0001127 | 1003 | Chr8 | 26817488 | 26817595 | + | - |
| osa-MIR169m | MI0001128 | 1012 | Chr8 | 26813897 | 26814034 | + | - |
| osa-MIR169n | MI0001129 | 82 | Chr11 | 6085252 | 6085428 | - | - |
| osa-MIR169o | MI0001130 | 82 | Chr11 | 6081528 | 6081700 | - | - |
| osa-MIR169p | MI0001131 | 0 | Chr8 | 7641327 | 7641452 | - | - |
| osa-MIR169q | MI0001132 | None | Chr8 | 26817488 | 26817595 | - | - |
| osa-MIR171b | MI0001133 | 363 | Chr8 | 5369153 | 5369252 | + | - |
| osa-MIR172b | MI0001140 | 201 | Chr1 | 42923736 | 42923973 | - | - |
| osa-MIR169r | MI0006973 | 69 | Chr3 | 35782416 | 35782544 | + | High |