Stem-loop osa-MIR159a

Accession

MI0001092

Description

Oryza sativa osa-MIR159a precursor miRNA

Literature search

96 open access papers mention osa-MIR159a
(479 sentences)

Sequence

26462762 reads, 84672.0 reads per million, 142 experiments

guuguggacguuGAGCUCCUUUCGGUCCAAAAAgggguguugcugugggucgauugAGCUGCUGGGUCAUGGAUCCCguuagccuacuccauguucaucauucagcucgagaucugaaagaaacuacuccaauuuauacuaauaguauguguguagauaggaaaaugauggaguacucguuguugggauaggcuuauggCUUGCAUGCCCCAGGAGCUGCaucaacccuacauggacccucUUUGGAUUGAAGGGAGCUCUGCaucuuuugu
.....(((.((.((((((((((((((((((..(((((.(((..(((((((.(((..((((.(((((.((((.(..((((.((((((.((((..((((((((((((........))))..........(((.((((((((...........)))))))).)))..))))))))...........)))).)))))).))))..).)))).))))).))))..))).)))).)))..)))))))))))))))))))))))))).)).))).....

Structure

guugu   c  u                  AA     u   gc   -    c   ug    G     U    G UC    u      c    ---------ug        ucagcucgagaucugaaagaaacuac   a        uaau 
     gga gu GAGCUCCUUUCGGUCCAA  Agggg guu  ugu gggu gau  AGCU CUGGG CAUG A  CCgu agccua ucca           uucaucau                          ucc auuuauac    a
     ||| || ||||||||||||||||||  ||||| |||  ||| |||| |||  |||| ||||| |||| |  |||| |||||| ||||           ||||||||                          ||| ||||||||    g
     ucu CG CUCGAGGGAAGUUAGGUU  Ucucc cag  aca ccca cua  UCGA GACCC GUAC U  ggua ucggau gggu           agguagua                          agg uagaugug    u
uguuu   a  U                  --     -   gu   u    a   CG    G     C    G UC    u      a    uguugcucaug        ------------------------aa   a        ugua 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR159/JAW family [1]. It is predicted to target mRNAs coding for MYB and TCP transcription factors.

Genome context

1: 17681923-17682194 [+]

Mature osa-miR159a-5p

• Accession: MIMAT0060828
• Description: Oryza sativa osa-miR159a-5p mature miRNA
• Sequence: 13 - GAGCUCCUUUCGGUCCAAAAA - 33
• Evidence: experimental ; Illumina [1]

Mature osa-miR159a-5p.2

• Accession: MIMAT0060829
• Description: Oryza sativa osa-miR159a-5p.2 mature miRNA
• Sequence: 57 - AGCUGCUGGGUCAUGGAUCCC - 77
• Evidence: experimental ; Illumina [1]

Mature osa-miR159a-3p.2

• Accession: MIMAT0009200
• Description: Oryza sativa osa-miR159a-3p.2 mature miRNA
• Sequence: 200 - CUUGCAUGCCCCAGGAGCUGC - 220
• Evidence: experimental ; cloned [1]

Mature osa-miR159a-3p

• Accession: MIMAT0001022
• Description: Oryza sativa osa-miR159a-3p mature miRNA
• Sequence: 242 - UUUGGAUUGAAGGGAGCUCUGC - 263
• Evidence: experimental

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 19055717
   Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice
   Lacombe S, Nagasaki H, Santi C, Duval D, Piégu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M
   BMC Plant Biol (2008) 8:123