miRBase entry: 19055717

Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice

PubMed ID 19055717
Authors Lacombe S, Nagasaki H, Santi C, Duval D, Piégu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M
Journal BMC Plant Biol
Volume 8
Pages 123

There are 193 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
osa-MIR159a MI0001092 1717 1 17681923 17682194 + High
osa-MIR1425 MI0006965 1196 5 8862149 8862250 + High
osa-MIR1428e MI0008239 5 3 23076870 23076979 + High
osa-MIR1874 MI0008277 3 8 8702798 8702948 - Medium
osa-MIR2055 MI0010489 71 9 431432 431531 - Low
osa-MIR827 MI0010490 478 2 23901168 23901284 - -
osa-MIR156a MI0000653 257272 1 22524147 22524246 - High
osa-MIR156b MI0000654 258339 1 4666341 4666516 + High
osa-MIR156c MI0000655 258287 1 4665975 4666123 + High
osa-MIR156d MI0000656 375099 2 4512884 4513012 - High
osa-MIR156e MI0000657 257257 4 25026327 25026430 - High
osa-MIR156f MI0000658 374943 8 21478230 21478415 + High
osa-MIR156g MI0000659 258296 9 15065253 15065368 + High
osa-MIR156h MI0000660 374943 8 21491232 21491417 + High
osa-MIR156i MI0000661 257274 2 24119995 24120084 - High
osa-MIR156j MI0000662 374978 6 26554795 26554959 + High
osa-MIR164a MI0000668 1892 7 28523341 28523496 - High
osa-MIR164b MI0000669 1921 5 15896163 15896271 - High
osa-MIR166a MI0000670 19323 10 19987135 19987279 + High
osa-MIR166b MI0000671 19371 6 30327084 30327289 - High
osa-MIR166c MI0000672 19151 3 3487788 3487912 + High
osa-MIR166d MI0000673 19377 2 26130059 26130183 + High
osa-MIR166e MI0000674 36 3 765724 765860 + High
osa-MIR166f MI0000675 19281 10 14483290 14483396 - High
osa-MIR169a MI0000679 3953 1 8729104 8729276 + Medium
osa-MIR393a MI0001026 98 1 2309149 2309263 - High
osa-MIR395b MI0001028 31 4 31805334 31805419 - Medium
osa-MIR395d MI0001029 22 4 31805055 31805142 - High
osa-MIR395e MI0001030 20 4 31804912 31804999 - High
osa-MIR395g MI0001031 19 4 31804633 31804718 - High
osa-MIR395h MI0001032 20 8 3299144 3299255 + High
osa-MIR395i MI0001033 19 8 3299319 3299417 + High
osa-MIR395j MI0001034 20 8 3299479 3299590 + High
osa-MIR395k MI0001035 19 8 3299652 3299750 + High
osa-MIR395l MI0001036 17 8 3299997 3300090 + High
osa-MIR395s MI0001037 22 4 32622943 32623028 + -
osa-MIR395t MI0001038 0 9 6607353 6607495 - Low
osa-MIR395c MI0001041 10 4 31805193 31805281 - Low
osa-MIR395a MI0001042 0 4 31805494 31805635 - High
osa-MIR395f MI0001043 0 4 31804774 31804855 - Low
osa-MIR395u MI0001044 0 9 6606701 6606786 - -
osa-MIR156k MI0001090 871 9 18289107 18289212 - High
osa-MIR156l MI0001091 10220 5 5230609 5230764 + High
osa-MIR159b MI0001093 1371 1 1215030 1215217 + High
osa-MIR159c MI0001094 62 1 6556048 6556244 - High
osa-MIR159d MI0001095 44 1 6563756 6563944 - High
osa-MIR159e MI0001096 46 1 9760708 9760898 - Low
osa-MIR159f MI0001097 83 1 6693112 6693299 + High
osa-MIR164c MI0001103 8 5 17327440 17327558 + High
osa-MIR164d MI0001104 2213 2 33143567 33143660 - High
osa-MIR164e MI0001105 1894 3 10542157 10542288 + High
osa-MIR166k MI0001107 1477 2 32435003 32435129 - High
osa-MIR166l MI0001108 1522 9 16951817 16951933 + High
osa-MIR168a MI0001115 282915 2 1553154 1553240 - High
osa-MIR168b MI0001116 1 2 27336428 27336533 + -
osa-MIR169b MI0001117 3267 6 27295908 27296035 - High
osa-MIR169c MI0001118 3454 4 30712338 30712449 - High
osa-MIR169d MI0001119 1 9 14620382 14620484 - -
osa-MIR169e MI0001120 804 2 31205866 31205997 - High
osa-MIR169f MI0001121 845 2 18558299 18558512 - High
osa-MIR169g MI0001122 1008 4 19420077 19420202 + High
osa-MIR169h MI0001123 1003 8 26807349 26807470 + High
osa-MIR169i MI0001124 1053 8 26803116 26803291 + High
osa-MIR169j MI0001125 1011 9 19788861 19788985 + High
osa-MIR169k MI0001126 1016 9 19792133 19792288 + High
osa-MIR169l MI0001127 1003 8 26817488 26817595 + High
osa-MIR169m MI0001128 1012 8 26813897 26814034 + High
osa-MIR169n MI0001129 82 11 6085252 6085428 - High
osa-MIR169o MI0001130 82 11 6081528 6081700 - High
osa-MIR169p MI0001131 0 8 7641327 7641452 - Low
osa-MIR169q MI0001132 None 8 26817488 26817595 - High
osa-MIR166g MI0001142 19256 12 18329367 18329511 + High
osa-MIR166h MI0001143 17849 2 32435174 32435292 - High
osa-MIR166i MI0001144 443 3 25294953 25295097 + High
osa-MIR393b MI0001148 216 4 34931876 34932007 - High
osa-MIR166m MI0001157 17946 8 23045356 23045555 + High
osa-MIR166j MI0001158 19511 3 30392782 30392881 - -
osa-MIR164f MI0001159 1904 5 23343908 23344117 + High
zma-MIR156d MI0001456 207336 5 94479574 94479692 - High
zma-MIR156f MI0001457 135637 2 185142785 185142951 - High
zma-MIR156g MI0001458 130978 7 120713378 120713498 + High
zma-MIR156b MI0001459 201162 3 7690198 7690321 - Medium
zma-MIR156c MI0001460 129128 3 7690484 7690622 - -
zma-MIR156e MI0001461 132496 2 33057365 33057490 + High
zma-MIR156a MI0001462 130538 4 87198600 87198751 - Medium
zma-MIR156h MI0001463 133708 10 131033462 131033576 - High
zma-MIR156i MI0001464 134769 4 142267696 142267812 - High
zma-MIR164a MI0001469 2975 2 223359910 223360061 - -
zma-MIR164d MI0001470 2975 7 181785756 181785971 - -
zma-MIR164b MI0001471 3176 6 152778225 152778352 + -
zma-MIR164c MI0001472 11750 6 164493875 164494144 + Low
zma-MIR169a MI0001473 2201 3 37821003 37821132 + Medium
zma-MIR169b MI0001474 1649 8 5103265 5103420 - Medium
zma-MIR166a MI0001480 353330 6 93955692 93955904 + High
zma-MIR166h MI0001482 356574 1 281340990 281341065 - High
zma-MIR166e MI0001483 350283 5 194582789 194582875 + High
zma-MIR166i MI0001485 353816 1 246976607 246976689 + -
zma-MIR166f MI0001486 356623 5 8453343 8453420 + High
zma-MIR166g MI0001487 362638 1 13677312 13677437 + High
zma-MIR166b MI0001488 349995 1 228668861 228668976 - High
zma-MIR166c MI0001489 350268 4 155691275 155691366 + High
zma-MIR166d MI0001490 349994 5 22886736 22886839 - High
osa-MIR444a MI0001719 1059 None None High
zma-MIR395b MI0001796 18 2 6550417 6550530 - -
zma-MIR395c MI0001798 0 10 80479861 80479998 - -
zma-MIR395a MI0001799 1332 2 6551072 6551220 - -
zma-MIR156j MI0001808 1457 7 135973787 135973911 - -
zma-MIR159a MI0001809 17754 8 10813534 10813779 + Medium
zma-MIR159b MI0001810 27471 8 10999667 10999887 + -
zma-MIR159c MI0001811 1799 3 2827135 2827351 - Medium
zma-MIR159d MI0001812 1381 8 27527989 27528205 + Medium
zma-MIR166k MI0001817 67163 5 219021288 219021455 - High
zma-MIR166j MI0001818 68413 7 129970156 129970309 + -
zma-MIR168a MI0001824 151808 5 76381854 76381957 - High
zma-MIR168b MI0001825 151163 4 247815828 247815931 - High
zma-MIR169c MI0001826 16201 2 11801045 11801178 + Medium
zma-MIR169f MI0001827 1983 5 168004586 168004735 + -
zma-MIR169g MI0001828 1754 2 67762521 67762660 + Low
zma-MIR169h MI0001829 1280 4 49933022 49933149 + Medium
zma-MIR169i MI0001830 2459 4 49606834 49607024 + Medium
zma-MIR169k MI0001831 2351 7 143533494 143533626 + Medium
zma-MIR169j MI0001832 2595 2 198645545 198645695 + Medium
zma-MIR169d MI0001833 444 4 49873250 49873377 - -
zma-MIR169e MI0001834 444 4 49933023 49933150 - -
zma-MIR166l MI0001841 348977 3 92760612 92760748 + -
zma-MIR166m MI0001842 347901 5 219021559 219021714 - High
zma-MIR393a MI0001845 3374 2 1029135 1029260 + Medium
zma-MIR156k MI0001847 9178 6 106015334 106015456 - High
osa-MIR395m MI0005084 17 4 32621993 32622112 + High
osa-MIR395n MI0005085 33 4 32622243 32622308 + High
osa-MIR395o MI0005086 1 4 32622381 32622449 + -
osa-MIR395p MI0005087 21 4 32622525 32622592 + -
osa-MIR395q MI0005088 21 4 32622668 32622735 + High
osa-MIR395v MI0005090 1 9 6606575 6606643 - Low
osa-MIR395w MI0005091 0 9 6606291 6606359 - -
osa-MIR395r MI0005092 17 4 32622811 32622878 + -
osa-MIR820a MI0005263 1532 1 14130479 14130669 + Low
osa-MIR820b MI0005264 1665 7 13120534 13120734 - Low
osa-MIR820c MI0005265 1655 10 6928681 6928871 + Low
osa-MIR1428a MI0006968 0 1 13160777 13160896 + -
osa-MIR169r MI0006973 69 3 35782416 35782544 + High
osa-MIR444b MI0006974 2333 None None High
osa-MIR444c MI0006975 4181 None None Medium
osa-MIR444d MI0006976 455 None None Medium
osa-MIR444e MI0006977 891 None None Medium
osa-MIR444f MI0006978 120 None None High
osa-MIR1428b MI0008235 2 1 25390346 25390469 + Low
osa-MIR1428c MI0008237 2 2 2535020 2535161 + Low
osa-MIR1428d MI0008238 2 3 23077268 23077391 + Low
osa-MIR1428f MI0010548 0 7 5451329 5451437 - High
osa-MIR1428g MI0010549 0 10 3961370 3961478 + Medium
zma-MIR396d MI0010570 9235 10 150180604 150180677 + -
osa-MIR396d MI0013049 1542 4 30320096 30320216 + -
zma-MIR156l MI0013184 131948 5 187671970 187672059 - High
zma-MIR159e MI0013185 3823 1 251679551 251679677 - -
zma-MIR159f MI0013186 15434 3 25560327 25560541 - Low
zma-MIR159g MI0013187 1245 8 10961065 10961316 + -
zma-MIR159h MI0013188 216 8 10934884 10935083 + -
zma-MIR159i MI0013189 1245 8 10961065 10961316 + -
zma-MIR159j MI0013190 20514 8 10969634 10969885 + -
zma-MIR159k MI0013191 19488 8 10995792 10995991 + -
zma-MIR164e MI0013193 3520 1 46682211 46682326 + -
zma-MIR164f MI0013194 2839 4 181555581 181555688 + -
zma-MIR164g MI0013195 3844 6 149358763 149358933 - -
zma-MIR164h MI0013196 9316 8 121512189 121512407 + -
zma-MIR166n MI0013197 66413 4 183131871 183131966 + High
zma-MIR169l MI0013199 0 1 305227392 305227480 + -
zma-MIR169m MI0013200 491 3 103547345 103547445 + -
zma-MIR169n MI0013201 6 3 235766947 235767050 + -
zma-MIR169o MI0013202 1048 4 13971602 13971739 + -
zma-MIR169p MI0013203 1338 7 115747093 115747157 - -
zma-MIR169q MI0013204 40 8 130146941 130147046 + -
zma-MIR169r MI0013205 758 9 113611057 113611182 - -
zma-MIR393b MI0013210 96 3 18649433 18649540 + High
zma-MIR393c MI0013211 555 10 150904915 150905011 - High
zma-MIR395d MI0013212 6 2 6539320 6539385 - -
zma-MIR395e MI0013213 235 2 6549440 6549524 - -
zma-MIR395f MI0013214 6 2 6539976 6540045 - -
zma-MIR395g MI0013215 6 2 6540136 6540201 - -
zma-MIR395h MI0013216 235 2 6549440 6549524 - -
zma-MIR395i MI0013217 18 2 6549617 6549686 - -
zma-MIR395j MI0013218 235 2 6549440 6549524 - -
zma-MIR395k MI0013219 0 10 80479415 80479498 - -
zma-MIR395l MI0013220 0 10 80479586 80479666 - -
zma-MIR395m MI0013221 0 10 80479715 80479796 - -
zma-MIR395n MI0013222 15 10 146921813 146921878 + -
zma-MIR395o MI0013223 290 10 146921986 146922211 + -
zma-MIR395p MI0013224 15 10 146922304 146922392 + -
zma-MIR827 MI0013242 16585 5 170618954 170619075 - High
osa-MIR395x MI0013350 1 4 32623067 32623162 + Low
osa-MIR395y MI0013351 25 8 3299815 3299924 + High
zma-MIR444a MI0019128 2908 None None -
zma-MIR444b MI0019129 3334 None None -



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