miRBase entry: 19055717

Identification of precursor transcripts for 6 novel miRNAs expands the diversity on the genomic organisation and expression of miRNA genes in rice

PubMed ID 19055717
Authors Lacombe S, Nagasaki H, Santi C, Duval D, Piégu B, Bangratz M, Breitler JC, Guiderdoni E, Brugidou C, Hirsch J, Cao X, Brice C, Panaud O, Karlowski WM, Sato Y, Echeverria M
Journal BMC Plant Biol
Volume 8
Pages 123

There are 193 miRNAs associated with this paper:
Name Accession RPM Chromosome Start End Strand Confidence
osa-MIR159a MI0001092 1717 Chr1 17681923 17682194 + -
osa-MIR1425 MI0006965 1196 Chr5 8862149 8862250 + High
osa-MIR1428e MI0008239 5 Chr3 23076870 23076979 + -
osa-MIR1874 MI0008277 3 Chr8 8702798 8702948 - -
osa-MIR2055 MI0010489 71 Chr9 431432 431531 - -
osa-MIR827 MI0010490 478 None None -
osa-MIR156a MI0000653 257272 Chr1 22524147 22524246 - -
osa-MIR156b MI0000654 258339 Chr1 4666341 4666516 + High
osa-MIR156c MI0000655 258287 Chr1 4665975 4666123 + High
osa-MIR156d MI0000656 375099 Chr2 4512884 4513012 - -
osa-MIR156e MI0000657 257257 Chr4 25026327 25026430 - -
osa-MIR156f MI0000658 374943 Chr8 21478230 21478415 + High
osa-MIR156g MI0000659 258296 Chr9 15065253 15065368 + High
osa-MIR156h MI0000660 374943 Chr8 21491232 21491417 + High
osa-MIR156i MI0000661 257274 Chr2 24119995 24120084 - -
osa-MIR156j MI0000662 374978 Chr6 26554795 26554959 + High
osa-MIR164a MI0000668 1892 Chr7 28523341 28523496 - -
osa-MIR164b MI0000669 1921 Chr5 15896163 15896271 - -
osa-MIR166a MI0000670 19323 Chr10 19987135 19987279 + High
osa-MIR166b MI0000671 19371 Chr6 30327084 30327289 - High
osa-MIR166c MI0000672 19151 Chr3 3487788 3487912 + High
osa-MIR166d MI0000673 19377 Chr2 26130059 26130183 + High
osa-MIR166e MI0000674 36 Chr3 765724 765860 + -
osa-MIR166f MI0000675 19281 Chr10 14483290 14483396 - -
osa-MIR169a MI0000679 3953 Chr1 8729104 8729276 + -
osa-MIR393a MI0001026 98 Chr1 2309149 2309263 - -
osa-MIR395b MI0001028 31 Chr4 31805334 31805419 - -
osa-MIR395d MI0001029 22 Chr4 31805055 31805142 - -
osa-MIR395e MI0001030 20 Chr4 31804912 31804999 - -
osa-MIR395g MI0001031 19 Chr4 31804633 31804718 - -
osa-MIR395h MI0001032 20 Chr8 3299144 3299255 + -
osa-MIR395i MI0001033 19 Chr8 3299319 3299417 + -
osa-MIR395j MI0001034 20 Chr8 3299479 3299590 + -
osa-MIR395k MI0001035 19 Chr8 3299652 3299750 + -
osa-MIR395l MI0001036 17 Chr8 3299997 3300090 + -
osa-MIR395s MI0001037 22 Chr4 32622943 32623028 + -
osa-MIR395t MI0001038 0 Chr9 6607353 6607495 - -
osa-MIR395c MI0001041 10 Chr4 31805193 31805281 - -
osa-MIR395a MI0001042 0 Chr4 31805494 31805635 - -
osa-MIR395f MI0001043 0 Chr4 31804774 31804855 - -
osa-MIR395u MI0001044 0 Chr9 6606701 6606786 - -
osa-MIR156k MI0001090 871 Chr9 18289107 18289212 - -
osa-MIR156l MI0001091 10220 Chr5 5230609 5230764 + High
osa-MIR159b MI0001093 1371 Chr1 1215030 1215217 + -
osa-MIR159c MI0001094 62 Chr1 6556048 6556244 - -
osa-MIR159d MI0001095 44 Chr1 6563756 6563944 - -
osa-MIR159e MI0001096 46 Chr1 9760708 9760898 - -
osa-MIR159f MI0001097 83 Chr1 6693112 6693299 + -
osa-MIR164c MI0001103 8 Chr5 17327440 17327558 + -
osa-MIR164d MI0001104 2213 Chr2 33143567 33143660 - -
osa-MIR164e MI0001105 1894 Chr3 10542157 10542288 + -
osa-MIR166k MI0001107 1477 Chr2 32435003 32435129 - High
osa-MIR166l MI0001108 1522 Chr9 16951817 16951933 + High
osa-MIR168a MI0001115 282915 Chr2 1553154 1553240 - High
osa-MIR168b MI0001116 1 Chr2 27336428 27336533 + -
osa-MIR169b MI0001117 3267 Chr6 27295908 27296035 - -
osa-MIR169c MI0001118 3454 Chr4 30712338 30712449 - -
osa-MIR169d MI0001119 1 Chr9 14620382 14620484 - -
osa-MIR169e MI0001120 804 Chr2 31205866 31205997 - -
osa-MIR169f MI0001121 845 Chr2 18558299 18558512 - -
osa-MIR169g MI0001122 1008 Chr4 19420077 19420202 + -
osa-MIR169h MI0001123 1003 Chr8 26807349 26807470 + -
osa-MIR169i MI0001124 1053 Chr8 26803116 26803291 + High
osa-MIR169j MI0001125 1011 Chr9 19788861 19788985 + -
osa-MIR169k MI0001126 1016 Chr9 19792133 19792288 + -
osa-MIR169l MI0001127 1003 Chr8 26817488 26817595 + -
osa-MIR169m MI0001128 1012 Chr8 26813897 26814034 + -
osa-MIR169n MI0001129 82 Chr11 6085252 6085428 - -
osa-MIR169o MI0001130 82 Chr11 6081528 6081700 - -
osa-MIR169p MI0001131 0 Chr8 7641327 7641452 - -
osa-MIR169q MI0001132 None Chr8 26817488 26817595 - -
osa-MIR166g MI0001142 19256 Chr12 18329367 18329511 + -
osa-MIR166h MI0001143 17849 Chr2 32435174 32435292 - High
osa-MIR166i MI0001144 443 Chr3 25294953 25295097 + -
osa-MIR393b MI0001148 216 Chr4 34931876 34932007 - High
osa-MIR166m MI0001157 17946 Chr8 23045356 23045555 + -
osa-MIR166j MI0001158 19511 None None -
osa-MIR164f MI0001159 1904 Chr5 23343908 23344117 + -
zma-MIR156d MI0001456 207336 chr5 94725847 94725965 - High
zma-MIR156f MI0001457 135637 chr2 185613978 185614144 - High
zma-MIR156g MI0001458 130978 chr7 119411284 119411404 + High
zma-MIR156b MI0001459 201162 chr3 6928278 6928401 - -
zma-MIR156c MI0001460 129128 None None -
zma-MIR156e MI0001461 132496 chr2 33005026 33005151 + High
zma-MIR156a MI0001462 130538 chr4 87069146 87069297 - -
zma-MIR156h MI0001463 133708 chr10 129642870 129642984 - -
zma-MIR156i MI0001464 134769 chr4 140280587 140280703 - High
zma-MIR164a MI0001469 2975 chr2 223401157 223401308 - -
zma-MIR164d MI0001470 2975 chr7 178154786 178155001 + -
zma-MIR164b MI0001471 3176 chr6 145727415 145727542 + -
zma-MIR164c MI0001472 11750 chr6 157477837 157478106 + Low
zma-MIR169a MI0001473 2201 chr3 37346686 37346815 + -
zma-MIR169b MI0001474 1649 chr8 5012331 5012486 - -
zma-MIR166a MI0001480 353330 chr6 87381728 87381940 + High
zma-MIR166h MI0001482 356574 chr1 279585912 279585987 - -
zma-MIR166e MI0001483 350283 chr5 195602244 195602330 + -
zma-MIR166i MI0001485 353816 chr1 244940015 244940097 + High
zma-MIR166f MI0001486 356623 chr5 8289186 8289263 + -
zma-MIR166g MI0001487 362638 chr1 13782628 13782753 + High
zma-MIR166b MI0001488 349995 chr1 226759256 226759371 - High
zma-MIR166c MI0001489 350268 chr4 153858453 153858544 + -
zma-MIR166d MI0001490 349994 chr5 22443534 22443637 - High
osa-MIR444a MI0001719 1059 None None High
zma-MIR395b MI0001796 18 chr2 6287388 6287501 - -
zma-MIR395c MI0001798 0 chr10 78600687 78600824 - -
zma-MIR395a MI0001799 1332 chr2 6288043 6288191 - -
zma-MIR156j MI0001808 1457 chr7 134663764 134663888 - -
zma-MIR159a MI0001809 17754 chr8 10753073 10753318 + High
zma-MIR159b MI0001810 27471 chr8 10950933 10951153 + -
zma-MIR159c MI0001811 1799 chr3 2020760 2020976 - -
zma-MIR159d MI0001812 1381 chr8 27675686 27675902 + -
zma-MIR166k MI0001817 67163 chr5 216483766 216483933 - High
zma-MIR166j MI0001818 68413 chr7 128589394 128589547 + High
zma-MIR168a MI0001824 151808 chr5 76534928 76535031 - Low
zma-MIR168b MI0001825 151163 chr4 244520636 244520739 - High
zma-MIR169c MI0001826 16201 chr2 11553338 11553471 + -
zma-MIR169f MI0001827 1983 chr5 168617435 168617584 + -
zma-MIR169g MI0001828 1754 chr2 67281149 67281288 + -
zma-MIR169h MI0001829 1280 chr4 49625355 49625482 + -
zma-MIR169i MI0001830 2459 chr4 49299338 49299528 + -
zma-MIR169k MI0001831 2351 chr7 142286603 142286735 + -
zma-MIR169j MI0001832 2595 chr2 198435908 198436058 + High
zma-MIR169d MI0001833 444 chr4 49565639 49565766 - -
zma-MIR169e MI0001834 444 chr4 49625356 49625483 - -
zma-MIR166l MI0001841 348977 chr3 91435335 91435471 + High
zma-MIR166m MI0001842 347901 chr5 216484037 216484192 - High
zma-MIR393a MI0001845 3374 chr2 738724 738849 + -
zma-MIR156k MI0001847 9178 chr6 98967260 98967382 - -
osa-MIR395m MI0005084 17 Chr4 32621993 32622112 + -
osa-MIR395n MI0005085 33 Chr4 32622243 32622308 + -
osa-MIR395o MI0005086 1 Chr4 32622381 32622449 + -
osa-MIR395p MI0005087 21 Chr4 32622525 32622592 + -
osa-MIR395q MI0005088 21 Chr4 32622668 32622735 + -
osa-MIR395v MI0005090 1 Chr9 6606575 6606643 - -
osa-MIR395w MI0005091 0 Chr9 6606291 6606359 - -
osa-MIR395r MI0005092 17 None None -
osa-MIR820a MI0005263 1532 Chr1 14130479 14130669 + -
osa-MIR820b MI0005264 1665 Chr7 13120534 13120734 - Low
osa-MIR820c MI0005265 1655 Chr10 6928681 6928871 + -
osa-MIR1428a MI0006968 0 Chr1 13160777 13160896 + -
osa-MIR169r MI0006973 69 Chr3 35782416 35782544 + High
osa-MIR444b MI0006974 2333 None None -
osa-MIR444c MI0006975 4181 None None -
osa-MIR444d MI0006976 455 None None -
osa-MIR444e MI0006977 891 None None -
osa-MIR444f MI0006978 120 None None -
osa-MIR1428b MI0008235 2 Chr1 25390346 25390469 + -
osa-MIR1428c MI0008237 2 Chr2 2535020 2535161 + -
osa-MIR1428d MI0008238 2 Chr3 23077268 23077391 + -
osa-MIR1428f MI0010548 0 Chr7 5451329 5451437 - -
osa-MIR1428g MI0010549 0 Chr10 3961370 3961478 + -
zma-MIR396d MI0010570 9235 chr10 148727703 148727776 + -
osa-MIR396d MI0013049 1542 None None -
zma-MIR156l MI0013184 131948 chr5 188595332 188595421 - High
zma-MIR159e MI0013185 3823 chr1 249664337 249664463 - -
zma-MIR159f MI0013186 15434 chr3 25007834 25008048 - High
zma-MIR159g MI0013187 1245 None None -
zma-MIR159h MI0013188 216 chr8 10885935 10886134 + -
zma-MIR159i MI0013189 1245 chr8 10912332 10912583 + -
zma-MIR159j MI0013190 20514 chr8 10920901 10921152 + -
zma-MIR159k MI0013191 19488 chr8 10947058 10947257 + -
zma-MIR164e MI0013193 3520 chr1 47137796 47137911 + -
zma-MIR164f MI0013194 2839 chr4 179535508 179535615 + -
zma-MIR164g MI0013195 3844 chr6 142646355 142646525 - -
zma-MIR164h MI0013196 9316 chr8 121773384 121773602 + -
zma-MIR166n MI0013197 66413 chr4 181112182 181112277 + High
zma-MIR169l MI0013199 0 chr1 303772025 303772113 + -
zma-MIR169m MI0013200 491 chr3 102365461 102365561 + -
zma-MIR169n MI0013201 6 chr3 233919759 233919862 + -
zma-MIR169o MI0013202 1048 chr4 13818178 13818315 + -
zma-MIR169p MI0013203 1338 chr7 114375728 114375792 - -
zma-MIR169q MI0013204 40 chr8 130375286 130375391 + -
zma-MIR169r MI0013205 758 chr9 111791259 111791384 - -
zma-MIR393b MI0013210 96 chr3 17997197 17997304 + -
zma-MIR393c MI0013211 555 chr10 149451810 149451906 - Low
zma-MIR395d MI0013212 6 chr2 6276291 6276356 - -
zma-MIR395e MI0013213 235 chr2 6286411 6286495 - -
zma-MIR395f MI0013214 6 chr2 6276947 6277016 - -
zma-MIR395g MI0013215 6 chr2 6277107 6277172 - -
zma-MIR395h MI0013216 235 chr2 6287229 6287313 - -
zma-MIR395i MI0013217 18 chr2 6286588 6286657 - -
zma-MIR395j MI0013218 235 None None -
zma-MIR395k MI0013219 0 chr10 78600241 78600324 - -
zma-MIR395l MI0013220 0 chr10 78600412 78600492 - -
zma-MIR395m MI0013221 0 chr10 78600541 78600622 - -
zma-MIR395n MI0013222 15 chr10 145465911 145465976 + -
zma-MIR395o MI0013223 290 chr10 145466084 145466309 + -
zma-MIR395p MI0013224 15 chr10 145466402 145466490 + -
zma-MIR827 MI0013242 16585 chr5 171268609 171268730 - -
osa-MIR395x MI0013350 1 Chr4 32623067 32623162 + -
osa-MIR395y MI0013351 25 Chr8 3299815 3299924 + -
zma-MIR444a MI0019128 2908 None None -
zma-MIR444b MI0019129 3334 None None -



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