Stem-loop osa-MIR1428g

Accession

MI0010549

Description

Oryza sativa osa-MIR1428g precursor miRNA

Literature search

5 open access papers mention osa-MIR1428g
(15 sentences)

Sequence

19669 reads, 140.0 reads per million, 130 experiments

cgcuuugcgAAUUCACAGGCCCUAUCUUGUGguaugaacugaguacgcgaugauuuauggcgcauauugggggcuuaccaAAAGAUAAUGCUGUGAAUUUGCaaagcgc
((((((((((((((((((.(..((((((.(((((.(..((.(((((((.(((...))).)))..)))).))..).))))).))))))..))))))))))))))))))).

Structure

-                  G CC      G     u aa  g    --   g   a 
 cgcuuugcgAAUUCACAG C  UAUCUU UGgua g  cu agua  cgc aug  
 |||||||||||||||||| |  |||||| ||||| |  || ||||  ||| ||| u
 gcgaaaCGUUUAAGUGUC G  AUAGAA accau c  gg uuau  gcg uau  
c                  - UA      A     u gg  g    ac   g   u 

Annotation confidence Medium

Genome context

10: 3961370-3961478 [+]

Mature osa-miR1428g-5p

• Accession: MIMAT0010044
• Description: Oryza sativa osa-miR1428g-5p mature miRNA
• Sequence: 10 - AAUUCACAGGCCCUAUCUUGUG - 31
• Evidence: experimental ; Illumina [1]

Mature osa-miR1428g-3p

• Accession: MIMAT0056103
• Description: Oryza sativa osa-miR1428g-3p mature miRNA
• Sequence: 81 - AAAGAUAAUGCUGUGAAUUUGC - 102
• Evidence: experimental ; unknown

References

1. PubMed ID: 19103661
   Characterization and expression profiles of miRNAs in rice seeds
   "Xue LJ, Zhang JJ, Xue HW"
   "Nucleic Acids Res (2009) 37:916-930