Stem-loop osa-MIR395m

Accession

MI0005084

Description

Oryza sativa osa-MIR395m precursor miRNA

Literature search

40 open access papers mention osa-MIR395m
(167 sentences)

Sequence

49429 reads, 230.0 reads per million, 142 experiments

gaGUUCUCCUCAAAUCACUUCAGUagauagcuagcuaggcuucauugcauuacacuguuacaaaacugugagcauggggccaaaagcuaguuguauauaGUGAAGUGUUUGGGGGAACUC
(((((((((.((((.(((((((.((.((((((((((.((((((((.((.(((((..(((....))))))))))))))))))...))))))))))...)).))))))))))))))))))))

Structure

         U    U       G  --g          --a        u  a     cu   a 
gaGUUCUCC CAAA CACUUCA Ua   auagcuagcu   ggcuucau gc uuaca  guu c
||||||||| |||| ||||||| ||   ||||||||||   |||||||| || |||||  |||  
CUCAAGGGG GUUU GUGAAGU au   uguugaucga   ccggggua cg agugu  caa a
         -    -       G  aua          aaa        -  -     --   a 

Annotation confidence High

Comments

Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the gene names have been rationalised to reflect this arrangement [1].

Genome context

4: 32621993-32622112 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from osa-MIR395m

Mature osa-miR395m-5p

• Accession: MIMAT0055995
• Description: Oryza sativa osa-miR395m-5p mature miRNA
• Sequence: 3 - GUUCUCCUCAAAUCACUUCAGU - 24
• Evidence: experimental ; unknown

Mature osa-miR395m-3p

• Accession: MIMAT0003870
• Description: Oryza sativa osa-miR395m-3p mature miRNA
• Sequence: 100 - GUGAAGUGUUUGGGGGAACUC - 120
• Evidence: not_experimental

References

1. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638