Stem-loop osa-MIR395r

Accession

MI0005092

Description

Oryza sativa osa-MIR395r precursor miRNA

Literature search

40 open access papers mention osa-MIR395r
(163 sentences)

Sequence

gaguucccuucaaccacuucacguggcacuauuuuaggaccuacuauGUGAAGUGUUUGGGGGAACUC
(((((((((.(((.((((((((((((..(((...)))..))....)))))))))).))))))))))))

Structure

         u   c          ----  ca   u 
gaguucccu caa cacuucacgu    gg  cua  
||||||||| ||| ||||||||||    ||  ||| u
CUCAAGGGG GUU GUGAAGUGua    cc  gau  
         -   U          ucau  ag   u 

Annotation confidence Not enough data

Comments

Four clusters of rice miR395 genes are found on chromosomes 4, 8 and 9, and the gene names have been rationalised to reflect this arrangement [1].

Genome context

4: 32622811-32622878 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from osa-MIR395r

Mature osa-miR395r-3p

• Accession: MIMAT0003878
• Description: Oryza sativa osa-miR395r-3p mature miRNA
• Sequence: 48 - GUGAAGUGUUUGGGGGAACUC - 68
• Evidence: not_experimental

References

1. PubMed ID: 16117853
   Molecular evolution of the rice miR395 gene family
   "Guddeti S, Zhang DC, Li AL, Leseberg CH, Kang H, Li XG, Zhai WX, Johns MA, Mao L"
   "Cell Res (2005) 15:631-638