Stem-loop osa-MIR1428a

Accession

MI0006968

Description

Oryza sativa osa-MIR1428a precursor miRNA

Literature search

5 open access papers mention osa-MIR1428a
(20 sentences)

Sequence

gguuagugCGUUUUGCAAAUUCGCAGGCCcuaucuugugguaugaacugaguacgcgaugauuuauccugcguauugggggcuuaccaUAAGAUAAAGCCGUGAAUUUGcaaaacguuca
.....(.(((((((((((((((((.(((..((((((((((((.(..((.(((((((((((...))))..))))))).))..).))))))))))))..)))))))))))))))))))).).

Structure

gguua u                 A   Cc            u aa  g       --    a 
     g gCGUUUUGCAAAUUCGC GGC  uaucuuguggua g  cu aguacgc  gaug  
     | ||||||||||||||||| |||  |||||||||||| |  || |||||||  |||| u
     c ugcaaaacGUUUAAGUG CCG  AUAGAAUaccau c  gg uuaugcg  cuau  
----a u                 -   AA            u gg  g       uc    u 

Annotation confidence Not enough data

Genome context

Chr1: 13160777-13160896 [+]

Mature osa-miR1428a-5p

• Accession: MIMAT0005962
• Description: Oryza sativa osa-miR1428a-5p mature miRNA
• Sequence: 9 - CGUUUUGCAAAUUCGCAGGCC - 29
• Evidence: experimental ; MPSS [1], Northern [1], cloned [2]

Mature osa-miR1428a-3p

• Accession: MIMAT0007280
• Description: Oryza sativa osa-miR1428a-3p mature miRNA
• Sequence: 89 - UAAGAUAAAGCCGUGAAUUUG - 109
• Evidence: experimental ; 454 [3]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25


2. PubMed ID: 18353984
   Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
   "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
   "Proc Natl Acad Sci U S A (2008) 105:4951-4956


3. PubMed ID: 18687877
   A diverse set of microRNAs and microRNA-like small RNAs in developing rice grains
   "Zhu QH, Spriggs A, Matthew L, Fan L, Kennedy G, Gubler F, Helliwell C"
   "Genome Res (2008) 18:1456-1465