Stem-loop osa-MIR166l

Accession

MI0001108

Description

Oryza sativa osa-MIR166l precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

70 open access papers mention osa-MIR166l
(260 sentences)

Sequence

2186 reads, 1522 reads per million, 2 experiments

guuagguuaaggGGAUUGUUGUCUGGUUCAAGGucuccacauugugcaaaauguucauucauggaggcacaggaugcuuggugaucUCGGACCAGGCUUCAAUCCCUuuaaccagca
(((.((((((((((((((..(((((((((.(((((.(((((((((((...(((......)))....)))))..)))..))).))))).)))))))))..))))))))))))))))).

Structure

-   a              UU         A     u   --   --     -aaa   uu 
 guu gguuaaggGGAUUG  GUCUGGUUC AGGuc cca  cau  ugugc    aug  c
 ||| ||||||||||||||  ||||||||| ||||| |||  |||  |||||    |||   
 cga ccaauuUCCCUAAC  CGGACCAGG Ucuag ggu  gua  acacg    uac  a
a   -              UU         C     u   uc   gg     gagg   uu 

Annotation confidence High

Comments

This sequence is a predicted paralogue of the previously identified miR166 family [1]. It is predicted to target mRNAs coding for HD-Zip transcription factors.

Genome context

Chr9: 16951817-16951933 [+]

Mature osa-miR166l-3p

• Accession: MIMAT0001038
• Description: Oryza sativa osa-miR166l-3p mature miRNA
• Sequence: 87 - UCGGACCAGGCUUCAAUCCCU - 107
• Evidence: not_experimental

Mature osa-miR166l-5p

• Accession: MIMAT0022871
• Description: Oryza sativa osa-miR166l-5p mature miRNA
• Sequence: 13 - GGAUUGUUGUCUGGUUCAAGG - 33
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15200956
   Computational identification of plant microRNAs and their targets, including a stress-induced miRNA
   "Jones-Rhoades MW, Bartel DP"
   "Mol Cell (2004) 14:787-799


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176