Stem-loop zma-MIR395o

Accession

MI0013223

Description

Zea mays zma-MIR395o precursor miRNA

Literature search

18 open access papers mention zma-MIR395o
(86 sentences)

Sequence

12 reads, 74 reads per million, 4 experiments

aGUUCUCUUCAAGCACUUCACGAggcaucacacugagagcuuuugugaaguguuugggggaacucuuggugucacaaaucauuugcauuugcuugauguuagucaugcaccaugugauaugagauaaaggacauggcaacguuuuguguuacuaggaguucccuacaagcacuucaugagaccuugacuuaauaaagggccauuGUGAAGUGUUUGGGUGAACUCu
(((((.((.(((((((((((((((((.......((((((.(((((((((((((((((((((((((((((((.((((((....((((...(((.((((....)))).))).(((((...............)))))))))...)))))).))))))))))))))).)))))))))))))))).))...)))).......))).)))))))))))))))).)))))..

Structure

--     U  U              -   aucacac    ---  c                -               u      ucau    -----------------------auu   u    g 
  aGUUC CU CAAGCACUUCACGA ggc       ugag   ag uuuugugaaguguuug ggggaacucuuggug cacaaa    uugc                          ugc ugau u
  ||||| || |||||||||||||| |||       ||||   || |||||||||||||||| ||||||||||||||| ||||||    ||||                          ||| ||||  
  UCAAG GG GUUUGUGAAGUGuu ccg       auuc   uc agaguacuucacgaac ucccuugaggaucau guguuu    aacg                          acg acug u
uC     U  -              a   ggaaaua    agu  c                a               u      -ugc    guacaggaaauagaguauaguguacc   u    a 

Annotation confidence Not enough data

Genome context

chr10: 145466084-145466309 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from zma-MIR395o

Mature zma-miR395o-5p

• Accession: MIMAT0015347
• Description: Zea mays zma-miR395o-5p mature miRNA
• Sequence: 2 - GUUCUCUUCAAGCACUUCACGA - 23
• Evidence: experimental ; Illumina [1]

Mature zma-miR395o-3p

• Accession: MIMAT0014012
• Description: Zea mays zma-miR395o-3p mature miRNA
• Sequence: 205 - GUGAAGUGUUUGGGUGAACUC - 225
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716