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A genome-wide characterization of microRNA genes in maize |
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|---|---|
| PubMed ID | 19936050 |
| Authors | Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D |
| Journal | PLoS Genet |
| Volume | 5 |
| Pages | e1000716 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| zma-MIR156d | MI0001456 | 207336 | chr5 | 94725847 | 94725965 | - | High |
| zma-MIR156f | MI0001457 | 135637 | chr2 | 185613978 | 185614144 | - | High |
| zma-MIR156g | MI0001458 | 130978 | chr7 | 119411284 | 119411404 | + | High |
| zma-MIR156b | MI0001459 | 201162 | chr3 | 6928278 | 6928401 | - | - |
| zma-MIR156c | MI0001460 | 129128 | None | None | - | ||
| zma-MIR156e | MI0001461 | 132496 | chr2 | 33005026 | 33005151 | + | High |
| zma-MIR156a | MI0001462 | 130538 | chr4 | 87069146 | 87069297 | - | - |
| zma-MIR156h | MI0001463 | 133708 | chr10 | 129642870 | 129642984 | - | - |
| zma-MIR156i | MI0001464 | 134769 | chr4 | 140280587 | 140280703 | - | High |
| zma-MIR160a | MI0001465 | 1707 | chr4 | 241638522 | 241638625 | + | - |
| zma-MIR160c | MI0001466 | 2127 | chr6 | 9551862 | 9551961 | + | - |
| zma-MIR160d | MI0001467 | 2388 | chr1 | 288700634 | 288700775 | - | - |
| zma-MIR160b | MI0001468 | 1502 | chr5 | 44296768 | 44296888 | - | High |
| zma-MIR164a | MI0001469 | 2975 | chr2 | 223401157 | 223401308 | - | - |
| zma-MIR164d | MI0001470 | 2975 | chr7 | 178154786 | 178155001 | + | - |
| zma-MIR164b | MI0001471 | 3176 | chr6 | 145727415 | 145727542 | + | - |
| zma-MIR164c | MI0001472 | 11750 | chr6 | 157477837 | 157478106 | + | Low |
| zma-MIR169a | MI0001473 | 2201 | chr3 | 37346686 | 37346815 | + | - |
| zma-MIR169b | MI0001474 | 1649 | chr8 | 5012331 | 5012486 | - | - |
| zma-MIR167a | MI0001475 | 46848 | chr3 | 119392621 | 119392810 | + | - |
| zma-MIR167b | MI0001476 | 49044 | chr5 | 7976369 | 7976495 | + | - |
| zma-MIR167d | MI0001477 | 48117 | chr1 | 292918639 | 292918771 | - | - |
| zma-MIR167c | MI0001478 | 48528 | chr5 | 4414244 | 4414375 | + | High |
| zma-MIR166a | MI0001480 | 353330 | chr6 | 87381728 | 87381940 | + | High |
| zma-MIR162 | MI0001481 | 2013 | chr5 | 186614119 | 186614248 | + | - |
| zma-MIR166h | MI0001482 | 356574 | chr1 | 279585912 | 279585987 | - | - |
| zma-MIR166i | MI0001485 | 353816 | chr1 | 244940015 | 244940097 | + | High |
| zma-MIR166g | MI0001487 | 362638 | chr1 | 13782628 | 13782753 | + | High |
| zma-MIR166b | MI0001488 | 349995 | chr1 | 226759256 | 226759371 | - | High |
| zma-MIR166c | MI0001489 | 350268 | chr4 | 153858453 | 153858544 | + | - |
| zma-MIR166d | MI0001490 | 349994 | chr5 | 22443534 | 22443637 | - | High |
| zma-MIR171a | MI0001491 | 284 | chr4 | 239713555 | 239713653 | + | - |
| zma-MIR171b | MI0001492 | 5349 | chr5 | 223360741 | 223360825 | - | High |
| zma-MIR172d | MI0001494 | 5334 | chr6 | 172029786 | 172029859 | + | - |
| zma-MIR172b | MI0001495 | 5334 | chr5 | 221721349 | 221721474 | - | - |
| zma-MIR172c | MI0001496 | 5389 | chr4 | 174154928 | 174155050 | + | High |
| zma-MIR171d | MI0001792 | 4835 | chr9 | 128212960 | 128213080 | + | High |
| zma-MIR171f | MI0001793 | 4292 | chr5 | 8896283 | 8896437 | - | Low |
| zma-MIR394a | MI0001794 | 1948 | chr5 | 199240964 | 199241089 | + | - |
| zma-MIR394b | MI0001795 | 3217 | chr4 | 157728375 | 157728496 | + | - |
| zma-MIR395b | MI0001796 | 18 | chr2 | 6287388 | 6287501 | - | - |
| zma-MIR395c | MI0001798 | 0 | chr10 | 78600687 | 78600824 | - | - |
| zma-MIR395a | MI0001799 | 1332 | chr2 | 6288043 | 6288191 | - | - |
| zma-MIR396b | MI0001800 | 2076 | chr9 | 15122740 | 15122875 | - | - |
| zma-MIR396a | MI0001801 | 3766 | chr4 | 176326883 | 176327019 | + | Low |
| zma-MIR399a | MI0001802 | 760 | chr4 | 233617206 | 233617328 | - | - |
| zma-MIR399c | MI0001803 | 1112 | chr6 | 163867932 | 163868138 | + | - |
| zma-MIR399b | MI0001804 | 1933 | chr4 | 158285681 | 158285802 | + | High |
| zma-MIR399d | MI0001805 | 2070 | chr3 | 192096065 | 192096189 | + | High |
| zma-MIR399e | MI0001806 | 633 | chr2 | 16763309 | 16763432 | - | - |
| zma-MIR399f | MI0001807 | 147 | chr6 | 163860157 | 163860261 | - | High |
| zma-MIR156j | MI0001808 | 1457 | chr7 | 134663764 | 134663888 | - | - |
| zma-MIR159a | MI0001809 | 17754 | chr8 | 10753073 | 10753318 | + | High |
| zma-MIR159b | MI0001810 | 27471 | chr8 | 10950933 | 10951153 | + | - |
| zma-MIR159c | MI0001811 | 1799 | chr3 | 2020760 | 2020976 | - | - |
| zma-MIR159d | MI0001812 | 1381 | chr8 | 27675686 | 27675902 | + | - |
| zma-MIR319a | MI0001813 | 15703 | chr3 | 215788718 | 215788926 | + | - |
| zma-MIR319c | MI0001814 | 19645 | chr8 | 152709450 | 152709665 | - | - |
| zma-MIR319b | MI0001815 | 13480 | chr3 | 2038966 | 2039178 | + | High |
| zma-MIR319d | MI0001816 | 13900 | chr8 | 27608247 | 27608458 | - | Low |
| zma-MIR166k | MI0001817 | 67163 | chr5 | 216483766 | 216483933 | - | High |
| zma-MIR166j | MI0001818 | 68413 | chr7 | 128589394 | 128589547 | + | High |
| zma-MIR167e | MI0001819 | 51583 | chr7 | 10115799 | 10115917 | - | High |
| zma-MIR167f | MI0001820 | 48626 | chr3 | 195044719 | 195044837 | + | - |
| zma-MIR167g | MI0001821 | 52881 | chr3 | 119394584 | 119394826 | + | - |
| zma-MIR167h | MI0001822 | 54132 | chr6 | 95985872 | 95986014 | - | High |
| zma-MIR167i | MI0001823 | 55558 | chr9 | 113476123 | 113476252 | + | High |
| zma-MIR168a | MI0001824 | 151808 | chr5 | 76534928 | 76535031 | - | Low |
| zma-MIR168b | MI0001825 | 151163 | chr4 | 244520636 | 244520739 | - | High |
| zma-MIR169c | MI0001826 | 16201 | chr2 | 11553338 | 11553471 | + | - |
| zma-MIR169f | MI0001827 | 1983 | chr5 | 168617435 | 168617584 | + | - |
| zma-MIR169i | MI0001830 | 2459 | chr4 | 49299338 | 49299528 | + | - |
| zma-MIR169k | MI0001831 | 2351 | chr7 | 142286603 | 142286735 | + | - |
| zma-MIR169j | MI0001832 | 2595 | chr2 | 198435908 | 198436058 | + | High |
| zma-MIR169d | MI0001833 | 444 | chr4 | 49565639 | 49565766 | - | - |
| zma-MIR171c | MI0001835 | 39 | chr2 | 9079646 | 9079763 | + | - |
| zma-MIR171j | MI0001836 | 4710 | chr10 | 59006552 | 59006680 | + | - |
| zma-MIR171e | MI0001837 | 4498 | chr1 | 7976712 | 7976837 | + | High |
| zma-MIR171i | MI0001838 | 6821 | chr1 | 278093492 | 278093595 | + | - |
| zma-MIR171g | MI0001839 | 684 | chr7 | 44057814 | 44057925 | - | - |
| zma-MIR166l | MI0001841 | 348977 | chr3 | 91435335 | 91435471 | + | High |
| zma-MIR166m | MI0001842 | 347901 | chr5 | 216484037 | 216484192 | - | High |
| zma-MIR171k | MI0001843 | 1657 | chr10 | 138536838 | 138536941 | - | - |
| zma-MIR171h | MI0001844 | 270 | chr2 | 18027100 | 18027223 | - | - |
| zma-MIR393a | MI0001845 | 3374 | chr2 | 738724 | 738849 | + | - |
| zma-MIR156k | MI0001847 | 9178 | chr6 | 98967260 | 98967382 | - | - |
| zma-MIR160f | MI0001848 | 1329 | chr2 | 241093436 | 241093551 | - | - |
| zma-MIR396c | MI0010569 | 8272 | chr2 | 1951700 | 1951773 | - | - |
| zma-MIR396d | MI0010570 | 9235 | chr10 | 148727703 | 148727776 | + | - |
| zma-MIR156l | MI0013184 | 131948 | chr5 | 188595332 | 188595421 | - | High |
| zma-MIR159e | MI0013185 | 3823 | chr1 | 249664337 | 249664463 | - | - |
| zma-MIR159f | MI0013186 | 15434 | chr3 | 25007834 | 25008048 | - | High |
| zma-MIR159g | MI0013187 | 1245 | None | None | - | ||
| zma-MIR159h | MI0013188 | 216 | chr8 | 10885935 | 10886134 | + | - |
| zma-MIR159i | MI0013189 | 1245 | chr8 | 10912332 | 10912583 | + | - |
| zma-MIR159j | MI0013190 | 20514 | chr8 | 10920901 | 10921152 | + | - |
| zma-MIR159k | MI0013191 | 19488 | chr8 | 10947058 | 10947257 | + | - |
| zma-MIR160g | MI0013192 | 1537 | chr6 | 94036699 | 94036784 | + | High |
| zma-MIR164e | MI0013193 | 3520 | chr1 | 47137796 | 47137911 | + | - |
| zma-MIR164f | MI0013194 | 2839 | chr4 | 179535508 | 179535615 | + | - |
| zma-MIR164g | MI0013195 | 3844 | chr6 | 142646355 | 142646525 | - | - |
| zma-MIR164h | MI0013196 | 9316 | chr8 | 121773384 | 121773602 | + | - |
| zma-MIR166n | MI0013197 | 66413 | chr4 | 181112182 | 181112277 | + | High |
| zma-MIR167j | MI0013198 | 46365 | chr1 | 12791799 | 12791907 | + | High |
| zma-MIR169l | MI0013199 | 0 | chr1 | 303772025 | 303772113 | + | - |
| zma-MIR169m | MI0013200 | 491 | chr3 | 102365461 | 102365561 | + | - |
| zma-MIR169n | MI0013201 | 6 | chr3 | 233919759 | 233919862 | + | - |
| zma-MIR169o | MI0013202 | 1048 | chr4 | 13818178 | 13818315 | + | - |
| zma-MIR169p | MI0013203 | 1338 | chr7 | 114375728 | 114375792 | - | - |
| zma-MIR169q | MI0013204 | 40 | chr8 | 130375286 | 130375391 | + | - |
| zma-MIR169r | MI0013205 | 758 | chr9 | 111791259 | 111791384 | - | - |
| zma-MIR171l | MI0013206 | 1214 | chr1 | 249547375 | 249547452 | + | High |
| zma-MIR171m | MI0013207 | 2041 | chr5 | 20785928 | 20786009 | - | - |
| zma-MIR171n | MI0013208 | 284 | chr9 | 100082921 | 100082998 | - | - |
| zma-MIR390a | MI0013209 | 2342 | chr1 | 298107396 | 298107576 | + | High |
| zma-MIR393b | MI0013210 | 96 | chr3 | 17997197 | 17997304 | + | - |
| zma-MIR393c | MI0013211 | 555 | chr10 | 149451810 | 149451906 | - | Low |
| zma-MIR395d | MI0013212 | 6 | chr2 | 6276291 | 6276356 | - | - |
| zma-MIR395e | MI0013213 | 235 | chr2 | 6286411 | 6286495 | - | - |
| zma-MIR395f | MI0013214 | 6 | chr2 | 6276947 | 6277016 | - | - |
| zma-MIR395g | MI0013215 | 6 | chr2 | 6277107 | 6277172 | - | - |
| zma-MIR395h | MI0013216 | 235 | chr2 | 6287229 | 6287313 | - | - |
| zma-MIR395i | MI0013217 | 18 | chr2 | 6286588 | 6286657 | - | - |
| zma-MIR395j | MI0013218 | 235 | None | None | - | ||
| zma-MIR395k | MI0013219 | 0 | chr10 | 78600241 | 78600324 | - | - |
| zma-MIR395l | MI0013220 | 0 | chr10 | 78600412 | 78600492 | - | - |
| zma-MIR395m | MI0013221 | 0 | chr10 | 78600541 | 78600622 | - | - |
| zma-MIR395n | MI0013222 | 15 | chr10 | 145465911 | 145465976 | + | - |
| zma-MIR395o | MI0013223 | 290 | chr10 | 145466084 | 145466309 | + | - |
| zma-MIR395p | MI0013224 | 15 | chr10 | 145466402 | 145466490 | + | - |
| zma-MIR396e | MI0013225 | 2446 | chr4 | 176331864 | 176332029 | - | High |
| zma-MIR396f | MI0013226 | 1888 | chr5 | 220211653 | 220211769 | + | High |
| zma-MIR396g | MI0013227 | 0 | chr5 | 220222148 | 220222261 | + | - |
| zma-MIR396h | MI0013228 | 0 | chr9 | 15122758 | 15122881 | + | - |
| zma-MIR397a | MI0013229 | 149 | chr3 | 183569171 | 183569313 | - | - |
| zma-MIR397b | MI0013230 | 1114 | chr5 | 84610591 | 84610674 | - | - |
| zma-MIR398a | MI0013231 | 184 | chr2 | 174319898 | 174320037 | + | - |
| zma-MIR398b | MI0013232 | 901 | chr7 | 39887938 | 39888045 | + | - |
| zma-MIR399g | MI0013233 | 2451 | chr4 | 233618406 | 233618473 | + | - |
| zma-MIR399h | MI0013234 | 736 | chr5 | 150363095 | 150363188 | + | High |
| zma-MIR399i | MI0013235 | 1216 | chr5 | 150372041 | 150372131 | + | High |
| zma-MIR399j | MI0013236 | 2000 | chr9 | 24309478 | 24309652 | - | - |
| zma-MIR408b | MI0013237 | 1149 | chr8 | 39583938 | 39584084 | - | - |
| zma-MIR482 | MI0013238 | 0 | LPUQ01000192.1 | 319480 | 319601 | + | - |
| zma-MIR528a | MI0013239 | 6771 | chr1 | 6412284 | 6412406 | + | - |
| zma-MIR528b | MI0013240 | 5277 | chr9 | 156643654 | 156643731 | - | - |
| zma-MIR529 | MI0013241 | 12557 | chr5 | 164370906 | 164371031 | + | High |
| zma-MIR827 | MI0013242 | 16585 | chr5 | 171268609 | 171268730 | - | - |
| zma-MIR1432 | MI0013243 | 1912 | chr7 | 165932790 | 165932878 | - | - |
| zma-MIR390b | MI0013244 | 2342 | chr5 | 2846327 | 2846518 | + | High |
| sbi-MIR162 | MI0013252 | None | chr4 | 55732922 | 55733048 | + | - |
| sbi-MIR169o | MI0013253 | None | chr1 | 1019419 | 1019521 | - | - |
| sbi-MIR169p | MI0013254 | None | chr8 | 1349656 | 1349760 | + | - |
| sbi-MIR169q | MI0013255 | None | chr8 | 12317865 | 12317968 | - | - |
| sbi-MIR172f | MI0013256 | None | chr5 | 19295951 | 19296068 | - | - |
| sbi-MIR398 | MI0013257 | None | chr2 | 15132480 | 15132588 | - | - |
| sbi-MIR399k | MI0013258 | None | chr4 | 9790202 | 9790264 | + | - |
| sbi-MIR528 | MI0013259 | None | chr1 | 78558547 | 78558630 | - | - |
| sbi-MIR169e | MI0010873 | None | None | None | - | ||
| sbi-MIR390 | MI0010887 | None | chr1 | 2876710 | 2876888 | + | - |
| sbi-MIR396d | MI0010897 | None | chr4 | 68279979 | 68280074 | - | - |
| sbi-MIR397 | MI0010899 | None | chr4 | 4003721 | 4003811 | - | - |
| sbi-MIR437a | MI0010902 | None | chr10 | 3118652 | 3118841 | - | - |
| sbi-MIR437c | MI0010904 | None | chr1 | 20698964 | 20699138 | + | - |
| sbi-MIR437e | MI0010906 | None | chr1 | 61313938 | 61314038 | + | - |
| sbi-MIR529 | MI0010924 | None | chr4 | 44685716 | 44685831 | + | - |
| zma-MIR160e | MI0001479 | 1755 | None | None | - | ||
| zma-MIR166e | MI0001483 | 350283 | chr5 | 195602244 | 195602330 | + | - |
| zma-MIR166f | MI0001486 | 356623 | chr5 | 8289186 | 8289263 | + | - |
| zma-MIR172a | MI0001493 | 5343 | chr7 | 54276707 | 54276789 | - | - |
| zma-MIR169g | MI0001828 | 1754 | chr2 | 67281149 | 67281288 | + | - |
| zma-MIR169h | MI0001829 | 1280 | chr4 | 49625355 | 49625482 | + | - |
| zma-MIR169e | MI0001834 | 444 | chr4 | 49625356 | 49625483 | - | - |
| zma-MIR172e | MI0001840 | 2028 | chr3 | 145801592 | 145801765 | + | - |
| zma-MIR408a | MI0001846 | 1422 | chr3 | 58127890 | 58128080 | - | - |
| zma-MIR444a | MI0019128 | 2908 | None | None | - | ||
| zma-MIR444b | MI0019129 | 3334 | None | None | - |