Stem-loop zma-MIR398a

Accession

MI0013231

Description

Zea mays zma-MIR398a precursor miRNA

Literature search

15 open access papers mention zma-MIR398a
(59 sentences)

Sequence

12 reads, 184 reads per million, 5 experiments

gGGGGCGAACUGAGAACACAUGagaauaaugagaugagauugcucgccucgcgguacgguucgugcuggccuggaccaccgucgucgccguucaucuuguacgcauaauaaugcugcaUGUGUUCUCAGGUCGCCCCCGc
((((((((.(((((((((((((......(((((((((....((..((..((((((..((((((........)))))))))).))..)).)))))))))))..((((....))))..))))))))))))).))))))))..

Structure

--        A             ----------agaaua         gauu  uc  cu  -    ac      ugc 
  gGGGGCGA CUGAGAACACAUG                augagauga    gc  gc  cg cggu  gguucg   u
  |||||||| |||||||||||||                |||||||||    ||  ||  || ||||  ||||||    
  CCCCCGCU GACUCUUGUGUac                uguucuacu    ug  cg  gc gcca  ccaggu   g
cG        G             gucguaauaauacgca         ----  -c  cu  u    --      ccg 

Annotation confidence Not enough data

Genome context

chr2: 174319898-174320037 [+]

Mature zma-miR398a-5p

• Accession: MIMAT0015354
• Description: Zea mays zma-miR398a-5p mature miRNA
• Sequence: 2 - GGGGCGAACUGAGAACACAUG - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR398a-3p

• Accession: MIMAT0014020
• Description: Zea mays zma-miR398a-3p mature miRNA
• Sequence: 119 - UGUGUUCUCAGGUCGCCCCCG - 139
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716