Stem-loop zma-MIR390a

Accession

MI0013209

Description

Zea mays zma-MIR390a precursor miRNA

Literature search

14 open access papers mention zma-MIR390a
(105 sentences)

Sequence

1202 reads, 2342 reads per million, 110 experiments

gAAGCUCAGGAGGGAUAGCGCCuaggaaaacacauagaucggagccggccgcgaggagaaagaaagagccaagagauaugugugaugaauaaucuacauggaucuuggcuagcuuuuguguucuccucuggaggcgugguucugucuaucaaucugaagCGCUAUCUAUCCUGAGCUCCAc
(.(((((((((.(((((((((...(((......(((((.(((((((((((..((((((((.(((((((((((((..((((((.(((.....)))))))))..))))))))..)))))...))))))))....))).)))))))))))))...)))...))))))))).))))))))).)..

Structure

-- A         G         Cua   aaacac     u        -   --gc        --a     --        ga      u   g 
  g AGCUCAGGA GGAUAGCGC   gga      auaga cggagccg gcc    gaggagaa   gaaag  agccaaga  uaugug gau a
  | ||||||||| |||||||||   |||      ||||| |||||||| |||    ||||||||   |||||  ||||||||  |||||| ||| a
  C UCGAGUCCU UCUAUCGCg   ucu      uaucu gucuuggu cgg    cuccucuu   uuuuc  ucgguucu  guacau cua u
cA C         A         aag   ---aac     -        g   aggu        gug     ga        ag      -   a 

Annotation confidence High

Genome context

chr1: 298107396-298107576 [+]

Mature zma-miR390a-5p

• Accession: MIMAT0013998
• Description: Zea mays zma-miR390a-5p mature miRNA
• Sequence: 2 - AAGCUCAGGAGGGAUAGCGCC - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR390a-3p

• Accession: MIMAT0015333
• Description: Zea mays zma-miR390a-3p mature miRNA
• Sequence: 160 - CGCUAUCUAUCCUGAGCUCCA - 180
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716