Stem-loop zma-MIR166b

Accession

MI0001488

Description

Zea mays zma-MIR166b precursor miRNA

Literature search

33 open access papers mention zma-MIR166b
(199 sentences)

Sequence

116142 reads, 349995 reads per million, 5 experiments

guGGAAUGUUGUCUGGUUCAAGGucuugcuwuccgauuugaggaugauccaugcuugcauguguaguuuuuuuuguuccucagaucuacaagaucUCGGACCAGGCUUCAUUCCCc
..((((((..(((((((((.((((((((......((((((((((........(((.((....))))).........))))))))))..)))))))).)))))))))..))))))..

Structure

gu      UU         A        cuwucc          -ugauccau   u  a 
  GGAAUG  GUCUGGUUC AGGucuug      gauuugagga         gcu gc u
  ||||||  ||||||||| ||||||||      ||||||||||         ||| ||  
  CCUUAC  CGGACCAGG Ucuagaac      cuagacuccu         uga ug g
cC      UU         C        ----au          uguuuuuuu   -  u 

Annotation confidence High

Genome context

chr1: 226759256-226759371 [-]

Mature zma-miR166b-5p

• Accession: MIMAT0015151
• Description: Zea mays zma-miR166b-5p mature miRNA
• Sequence: 3 - GGAAUGUUGUCUGGUUCAAGG - 23
• Evidence: experimental ; Illumina [3]

Mature zma-miR166b-3p

• Accession: MIMAT0001382
• Description: Zea mays zma-miR166b-3p mature miRNA
• Sequence: 96 - UCGGACCAGGCUUCAUUCCC - 115
• Evidence: experimental ; Illumina [3]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


3. PubMed ID: 14999285
   microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity
   "Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC"
   "Nature (2004) 428:84-88