Stem-loop zma-MIR399j

Accession

MI0013236

Description

Zea mays zma-MIR399j precursor miRNA

Literature search

23 open access papers mention zma-MIR399j
(67 sentences)

Sequence

196 reads, 639.0 reads per million, 7 experiments

aGGCAGCUCUCCUCUGGCAGGcaggcgcgcggucaucgucgccaucgacgacgguugcuuggcucugcuaugcuguguucguucguccauggugugcuagcuagccgugcaugcauugcaguguaacaugcgugcaugcacgcgcguacguccUGCCAAAGGAGAGUUGCCCUgc
.((((((((((((.(((((((...(((((((((.(((((((.......))))))).))).((((..(((((((((((..(....)..))))))))...))).))))((((((((((.(((........)))))))))))))))))))....))))))).))))))))))))....

Structure

---a            C       -cag      -----ggucaucgucgccaucgacgacgguugcuu    cu   ---        uu g 
    GGCAGCUCUCCU UGGCAGG    gcgcgc                                   ggcu  gcu   augcugug  c u
    |||||||||||| |||||||    ||||||                                   ||||  |||   ||||||||  |  
    CCGUUGAGAGGA ACCGUcc    ugcgcg                                   ccga  cga   ugugguac  g u
cgUC            A       ugca      cacguacgugcguacaaugugacguuacguacgug    -u   ucg        cu c 

Annotation confidence High

Genome context

9: 26296969-26297143 [-]

Mature zma-miR399j-5p

• Accession: MIMAT0015359
• Description: Zea mays zma-miR399j-5p mature miRNA
• Sequence: 2 - GGCAGCUCUCCUCUGGCAGG - 21
• Evidence: experimental ; Illumina [1]

Mature zma-miR399j-3p

• Accession: MIMAT0014025
• Description: Zea mays zma-miR399j-3p mature miRNA
• Sequence: 154 - UGCCAAAGGAGAGUUGCCCU - 173
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716