Stem-loop zma-MIR396e

Accession

MI0013225

Description

Zea mays zma-MIR396e precursor miRNA

Literature search

22 open access papers mention zma-MIR396e
(78 sentences)

Sequence

594 reads, 987 reads per million, 4 experiments

uUUCCACAGCUUUCUUGAACUUcuucuucuucucucucuuagaagggccguauagcuucuuugaaccucucucucucucucucucaaaaguguacacgaacacuuucuucauucucugccucucgcucucugaucuccgaagaaGGUCAAGAAAGCCGUGGGAAGa
(((((((.((((((((((.(((((((..........((..(((((..........)))))..))......................(((((((......)))))))...........((.....))............))))))).)))))))))).)))))))..

Structure

--       A          A       ----------------------------------------------------------------uucuucucuc  uu     ggcc 
  uUUCCAC GCUUUCUUGA CUUcuuc                                                                          uc  agaag    g
  ||||||| |||||||||| |||||||                                                                          ||  |||||     
  AAGGGUG CGAAAGAACU Gaagaag                                                                          ag  ucuuc    u
aG       C          G       ccucuagucucucgcucuccgucucuuacuucuuucacaagcacaugugaaaacucucucucucucucucucca  uu     gaua 

Annotation confidence High

Genome context

chr4: 176331864-176332029 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from zma-MIR396e

Mature zma-miR396e-5p

• Accession: MIMAT0014014
• Description: Zea mays zma-miR396e-5p mature miRNA
• Sequence: 2 - UUCCACAGCUUUCUUGAACUU - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR396e-3p

• Accession: MIMAT0015349
• Description: Zea mays zma-miR396e-3p mature miRNA
• Sequence: 145 - GGUCAAGAAAGCCGUGGGAAG - 165
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716