Stem-loop zma-MIR160c

Accession

MI0001466

Description

Zea mays zma-MIR160c precursor miRNA

Literature search

21 open access papers mention zma-MIR160c
(75 sentences)

Sequence

578 reads, 2127 reads per million, 5 experiments

aggaugUGCCUGGCUCCCUGUAUGCCAcucaucuagagcaacgacagcuugguaggguugccuauaagauggaugGCGUGCAUGGUGCCAAGCAUAucuc
.((((((((.((((.((.(((((((((.((((((((.(((((..............)))))))...)))))).))))))))).)).)))).)))))))).

Structure

a        C    U  C         c      ---  a     gacagc 
 ggaugUGC UGGC CC UGUAUGCCA ucaucu   ag gcaac      u
 |||||||| |||| || ||||||||| ||||||   || |||||       
 ucuAUACG ACCG GG ACGUGCGgu gguaga   uc cguug      u
c        A    U  U         a      aua  -     ggaugg 

Annotation confidence Not enough data

Genome context

chr6: 9551862-9551961 [+]

Mature zma-miR160c-5p

• Accession: MIMAT0001361
• Description: Zea mays zma-miR160c-5p mature miRNA
• Sequence: 7 - UGCCUGGCUCCCUGUAUGCCA - 27
• Evidence: experimental ; Illumina [2]

Mature zma-miR160c-3p

• Accession: MIMAT0015133
• Description: Zea mays zma-miR160c-3p mature miRNA
• Sequence: 76 - GCGUGCAUGGUGCCAAGCAUA - 96
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716