Stem-loop zma-MIR171l

Accession

MI0013206

Description

Zea mays zma-MIR171l precursor miRNA

Literature search

19 open access papers mention zma-MIR171l
(50 sentences)

Sequence

383 reads, 576 reads per million, 5 experiments

gUAUUGGCGUGCCUCAAUCCGAaggcguggcugacuggcgcggcagccauguucuuGGAUUGAGCCGCGUCAAUAUCu
(((((((((((.((((((((((.((((((((((.(((...))))))))))))).)))))))))).)))))))))))..

Structure

--           C          a          a   g 
  gUAUUGGCGUG CUCAAUCCGA ggcguggcug cug  
  ||||||||||| |||||||||| |||||||||| ||| c
  UAUAACUGCGC GAGUUAGGuu uuguaccgac ggc  
uC           C          c          -   g 

Annotation confidence High

Genome context

chr1: 249547375-249547452 [+]

Mature zma-miR171l-5p

• Accession: MIMAT0015330
• Description: Zea mays zma-miR171l-5p mature miRNA
• Sequence: 2 - UAUUGGCGUGCCUCAAUCCGA - 22
• Evidence: experimental ; Illumina [1]

Mature zma-miR171l-3p

• Accession: MIMAT0013995
• Description: Zea mays zma-miR171l-3p mature miRNA
• Sequence: 57 - GGAUUGAGCCGCGUCAAUAUC - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716