Stem-loop zma-MIR172e

Accession

MI0001840

Description

Zea mays zma-MIR172e precursor miRNA

Literature search

36 open access papers mention zma-MIR172e
(214 sentences)

Sequence

299 reads, 881 reads per million, 4 experiments

cagccagccggugauuucuggaguggcaucaucaagauucacacacugcaugccaacauaaugcgcguguucaugcauccaucgccgccgcugcaucaugcaucauauauaauauauauauauguguaugugugGGAAUCUUGAUGAUGCUGCAUuggauaucaagggcuauau
.....((((..((((.(((((.((((((((((((((((((.(((((.((((((((......)).))))))..(((((......((....))))))).(((((.((((((((.....)))))))))))))))))).)))))))))))))))))).))))).))))..))))....

Structure

cagcc    gg    u     a                  a     ugcaugccaacauaaugcgcguguucaugcauccaucgccgccgcugcauc     u        a 
     agcc  ugau ucugg guggcaucaucaagauuc cacac                                                   augca cauauaua u
     ||||  |||| ||||| |||||||||||||||||| |||||                                                   ||||| |||||||| a
     ucgg  acua agguU CGUCGUAGUAGUUCUAAG gugug                                                   uaugu guauauau u
-uaua    ga    u     A                  G     ---------------------------------------------------     -        a 

Annotation confidence Not enough data

Genome context

chr3: 145801592-145801765 [+]

Mature zma-miR172e

• Accession: MIMAT0001742
• Description: Zea mays zma-miR172e mature miRNA
• Sequence: 135 - GGAAUCUUGAUGAUGCUGCAU - 155
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13