Conservation and divergence of microRNA families in plants |
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PubMed ID | N/A |
Authors | "Dezulian T, Palatnik JF, Huson DH, Weigel D" |
Journal | Genome Biol. |
Volume | 6 |
Pages | P13 |
Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
---|---|---|---|---|---|---|---|
sbi-MIR393a | MI0001530 | None | chr3 | 6442916 | 6443054 | + | - |
sbi-MIR394a | MI0001531 | None | chr2 | 66830969 | 66831078 | + | - |
sbi-MIR395b | MI0001533 | None | chr6 | 57784145 | 57784249 | + | - |
sbi-MIR395a | MI0001534 | None | chr6 | 57783551 | 57783700 | + | - |
sbi-MIR395d | MI0001536 | None | chr6 | 57228519 | 57228621 | - | - |
sbi-MIR395e | MI0001537 | None | chr6 | 57228710 | 57228814 | - | - |
sbi-MIR396b | MI0001538 | None | chr10 | 4466694 | 4466821 | + | - |
sbi-MIR396a | MI0001539 | None | chr4 | 66733975 | 66734099 | - | - |
sbi-MIR396c | MI0001540 | None | chr4 | 66726748 | 66726909 | + | - |
sbi-MIR399a | MI0001541 | None | chr3 | 61878757 | 61878892 | + | - |
sbi-MIR399c | MI0001542 | None | chr9 | 55505804 | 55505933 | - | - |
sbi-MIR399d | MI0001543 | None | chr10 | 1578286 | 1578490 | + | - |
sbi-MIR399e | MI0001544 | None | chr9 | 55507371 | 55507496 | + | - |
sbi-MIR399f | MI0001545 | None | chr10 | 48187250 | 48187369 | - | - |
sbi-MIR399b | MI0001546 | None | chr4 | 9764453 | 9764573 | - | - |
sbi-MIR399g | MI0001547 | None | chr9 | 55511807 | 55511931 | + | - |
sbi-MIR156d | MI0001548 | None | chr2 | 62805800 | 62805924 | - | - |
sbi-MIR164b | MI0001549 | None | chr4 | 65513692 | 65513802 | - | - |
sbi-MIR166e | MI0001550 | None | chr2 | 61405284 | 61405434 | + | - |
sbi-MIR167d | MI0001551 | None | chr2 | 4980559 | 4980706 | - | - |
sbi-MIR167f | MI0001552 | None | chr1 | 26092744 | 26092922 | + | - |
sbi-MIR167g | MI0001553 | None | chr3 | 64085700 | 64085822 | - | - |
sbi-MIR167e | MI0001554 | None | chr8 | 59225502 | 59225680 | + | - |
sbi-MIR167c | MI0001555 | None | chr10 | 56429519 | 56429649 | + | - |
sbi-MIR168 | MI0001556 | None | chr4 | 2247075 | 2247180 | - | - |
sbi-MIR169c | MI0001557 | None | chr6 | 39850630 | 39850755 | + | - |
sbi-MIR169d | MI0001558 | None | chr6 | 39811386 | 39811557 | + | - |
sbi-MIR169f | MI0001560 | None | chr2 | 64543540 | 64543687 | + | - |
sbi-MIR169g | MI0001561 | None | chr2 | 64546373 | 64546524 | + | - |
sbi-MIR169i | MI0001563 | None | chr5 | 16922857 | 16923025 | + | - |
sbi-MIR171b | MI0001564 | None | chr7 | 7691161 | 7691292 | + | - |
sbi-MIR171d | MI0001565 | None | chr1 | 78121346 | 78121498 | - | - |
sbi-MIR171a | MI0001566 | None | chr1 | 7802995 | 7803155 | - | - |
sbi-MIR171c | MI0001567 | None | chr2 | 17069962 | 17070070 | - | - |
sbi-MIR172e | MI0001568 | None | chr2 | 14122957 | 14123071 | - | - |
sbi-MIR166f | MI0001569 | None | chr4 | 64857783 | 64857921 | - | - |
sbi-MIR171e | MI0001570 | None | chr6 | 53651339 | 53651462 | + | - |
sbi-MIR159a | MI0001572 | None | None | None | - | ||
sbi-MIR319a | MI0001573 | None | chr3 | 1244769 | 1245017 | + | - |
mtr-MIR162 | MI0001738 | None | chr4 | 38145140 | 38145263 | + | - |
mtr-MIR160a | MI0001739 | None | contig_112492 | 316 | 434 | + | - |
mtr-MIR166a | MI0001740 | None | chr1 | 19059643 | 19059763 | - | - |
mtr-MIR169a | MI0001741 | None | contig_79842 | 860 | 980 | + | - |
mtr-MIR399b | MI0001743 | None | chr6 | 21517100 | 21517211 | - | - |
mtr-MIR399d | MI0001744 | None | chr6 | 21504277 | 21504405 | - | - |
mtr-MIR393a | MI0001745 | None | chr3 | 21952259 | 21952393 | + | - |
mtr-MIR395a | MI0001746 | None | chr5 | 16610555 | 16610689 | - | - |
mtr-MIR395b | MI0001747 | None | chr5 | 16653454 | 16653577 | - | - |
mtr-MIR399c | MI0001748 | None | chr8 | 24010865 | 24010983 | - | - |
mtr-MIR399a | MI0001749 | None | chr8 | 23163782 | 23163915 | - | - |
mtr-MIR399e | MI0001750 | None | chr8 | 23175117 | 23175250 | - | - |
mtr-MIR319a | MI0001751 | None | chr5 | 31290518 | 31290724 | + | - |
mtr-MIR156a | MI0001752 | None | contig_50145 | 402 | 861 | - | - |
mtr-MIR171a | MI0001753 | None | contig_164461 | 1012 | 1125 | - | - |
sof-MIR156 | MI0001754 | None | None | None | - | ||
sof-MIR396 | MI0001755 | None | None | None | - | ||
sof-MIR159a | MI0001756 | None | None | None | - | ||
sof-MIR159b | MI0001757 | None | None | None | - | ||
sof-MIR159d | MI0001758 | None | None | None | - | ||
sof-MIR159e | MI0001759 | None | None | None | - | ||
sof-MIR159c | MI0001760 | None | None | None | - | ||
sof-MIR167a | MI0001761 | None | None | None | - | ||
sof-MIR167b | MI0001762 | None | None | None | - | ||
sof-MIR168a | MI0001763 | None | None | None | - | ||
sof-MIR168b | MI0001764 | None | None | None | - | ||
sof-MIR408a | MI0001765 | None | None | None | - | ||
sof-MIR408b | MI0001766 | None | None | None | - | ||
sof-MIR408c | MI0001767 | None | None | None | - | ||
sof-MIR408d | MI0001768 | None | None | None | - | ||
sof-MIR408e | MI0001769 | None | None | None | - | ||
gma-MIR156d | MI0001770 | None | chr8 | 3896578 | 3896728 | + | - |
gma-MIR156e | MI0001771 | None | chr18 | 57144436 | 57144559 | - | - |
gma-MIR156c | MI0001772 | None | chr16 | 5359989 | 5360173 | - | - |
gma-MIR159a | MI0001773 | None | chr9 | 40266722 | 40266935 | + | - |
gma-MIR160a | MI0001774 | None | chr10 | 44431708 | 44431826 | - | - |
gma-MIR166a | MI0001775 | None | chr16 | 1934911 | 1935056 | - | - |
gma-MIR166b | MI0001776 | None | chr8 | 282785 | 282951 | - | - |
gma-MIR167a | MI0001777 | None | chr19 | 42073549 | 42073667 | + | - |
gma-MIR167b | MI0001778 | None | chr2 | 14838068 | 14838188 | - | - |
gma-MIR168a | MI0001779 | None | chr9 | 44068673 | 44068797 | - | - |
gma-MIR172a | MI0001780 | None | chr12 | 6139598 | 6139756 | - | - |
gma-MIR172b | MI0001781 | None | chr13 | 41847312 | 41847464 | - | - |
gma-MIR319a | MI0001782 | None | chr5 | 39506583 | 39506789 | - | - |
gma-MIR319b | MI0001783 | None | chr8 | 1650575 | 1650782 | - | - |
gma-MIR156a | MI0001784 | None | chr17 | 5885507 | 5885628 | - | - |
gma-MIR396a | MI0001785 | None | chr13 | 27525230 | 27525369 | - | - |
gma-MIR396b | MI0001786 | None | chr13 | 27517027 | 27517152 | + | - |
gma-MIR398a | MI0001787 | None | chr1 | 7214749 | 7214864 | - | - |
gma-MIR398b | MI0001788 | None | chr2 | 11080996 | 11081130 | - | - |
gma-MIR319c | MI0001789 | None | chr14 | 45231920 | 45232140 | - | - |
gma-MIR156b | MI0001790 | None | chr14 | 992155 | 992274 | + | - |
gma-MIR169a | MI0001791 | None | chr9 | 38336014 | 38336134 | + | - |
zma-MIR171d | MI0001792 | 4835 | chr9 | 128212960 | 128213080 | + | High |
zma-MIR171f | MI0001793 | 4292 | chr5 | 8896283 | 8896437 | - | Low |
zma-MIR394a | MI0001794 | 1948 | chr5 | 199240964 | 199241089 | + | - |
zma-MIR394b | MI0001795 | 3217 | chr4 | 157728375 | 157728496 | + | - |
zma-MIR395b | MI0001796 | 18 | chr2 | 6287388 | 6287501 | - | - |
zma-MIR395c | MI0001798 | 0 | chr10 | 78600687 | 78600824 | - | - |
zma-MIR395a | MI0001799 | 1332 | chr2 | 6288043 | 6288191 | - | - |
zma-MIR396b | MI0001800 | 2076 | chr9 | 15122740 | 15122875 | - | - |
zma-MIR396a | MI0001801 | 3766 | chr4 | 176326883 | 176327019 | + | Low |
zma-MIR399a | MI0001802 | 760 | chr4 | 233617206 | 233617328 | - | - |
zma-MIR399c | MI0001803 | 1112 | chr6 | 163867932 | 163868138 | + | - |
zma-MIR399b | MI0001804 | 1933 | chr4 | 158285681 | 158285802 | + | High |
zma-MIR399d | MI0001805 | 2070 | chr3 | 192096065 | 192096189 | + | High |
zma-MIR399e | MI0001806 | 633 | chr2 | 16763309 | 16763432 | - | - |
zma-MIR399f | MI0001807 | 147 | chr6 | 163860157 | 163860261 | - | High |
zma-MIR156j | MI0001808 | 1457 | chr7 | 134663764 | 134663888 | - | - |
zma-MIR159a | MI0001809 | 17754 | chr8 | 10753073 | 10753318 | + | High |
zma-MIR159b | MI0001810 | 27471 | chr8 | 10950933 | 10951153 | + | - |
zma-MIR159c | MI0001811 | 1799 | chr3 | 2020760 | 2020976 | - | - |
zma-MIR159d | MI0001812 | 1381 | chr8 | 27675686 | 27675902 | + | - |
zma-MIR319a | MI0001813 | 15703 | chr3 | 215788718 | 215788926 | + | - |
zma-MIR319c | MI0001814 | 19645 | chr8 | 152709450 | 152709665 | - | - |
zma-MIR319b | MI0001815 | 13480 | chr3 | 2038966 | 2039178 | + | High |
zma-MIR319d | MI0001816 | 13900 | chr8 | 27608247 | 27608458 | - | Low |
zma-MIR166k | MI0001817 | 67163 | chr5 | 216483766 | 216483933 | - | High |
zma-MIR166j | MI0001818 | 68413 | chr7 | 128589394 | 128589547 | + | High |
zma-MIR167e | MI0001819 | 51583 | chr7 | 10115799 | 10115917 | - | High |
zma-MIR167f | MI0001820 | 48626 | chr3 | 195044719 | 195044837 | + | - |
zma-MIR167g | MI0001821 | 52881 | chr3 | 119394584 | 119394826 | + | - |
zma-MIR167h | MI0001822 | 54132 | chr6 | 95985872 | 95986014 | - | High |
zma-MIR167i | MI0001823 | 55558 | chr9 | 113476123 | 113476252 | + | High |
zma-MIR168a | MI0001824 | 151808 | chr5 | 76534928 | 76535031 | - | Low |
zma-MIR168b | MI0001825 | 151163 | chr4 | 244520636 | 244520739 | - | High |
zma-MIR169c | MI0001826 | 16201 | chr2 | 11553338 | 11553471 | + | - |
zma-MIR169f | MI0001827 | 1983 | chr5 | 168617435 | 168617584 | + | - |
zma-MIR169g | MI0001828 | 1754 | chr2 | 67281149 | 67281288 | + | - |
zma-MIR169h | MI0001829 | 1280 | chr4 | 49625355 | 49625482 | + | - |
zma-MIR169i | MI0001830 | 2459 | chr4 | 49299338 | 49299528 | + | - |
zma-MIR169k | MI0001831 | 2351 | chr7 | 142286603 | 142286735 | + | - |
zma-MIR169j | MI0001832 | 2595 | chr2 | 198435908 | 198436058 | + | High |
zma-MIR169d | MI0001833 | 444 | chr4 | 49565639 | 49565766 | - | - |
zma-MIR169e | MI0001834 | 444 | chr4 | 49625356 | 49625483 | - | - |
zma-MIR171c | MI0001835 | 39 | chr2 | 9079646 | 9079763 | + | - |
zma-MIR171j | MI0001836 | 4710 | chr10 | 59006552 | 59006680 | + | - |
zma-MIR171e | MI0001837 | 4498 | chr1 | 7976712 | 7976837 | + | High |
zma-MIR171i | MI0001838 | 6821 | chr1 | 278093492 | 278093595 | + | - |
zma-MIR171g | MI0001839 | 684 | chr7 | 44057814 | 44057925 | - | - |
zma-MIR172e | MI0001840 | 2028 | chr3 | 145801592 | 145801765 | + | - |
zma-MIR166l | MI0001841 | 348977 | chr3 | 91435335 | 91435471 | + | High |
zma-MIR166m | MI0001842 | 347901 | chr5 | 216484037 | 216484192 | - | High |
zma-MIR171k | MI0001843 | 1657 | chr10 | 138536838 | 138536941 | - | - |
zma-MIR171h | MI0001844 | 270 | chr2 | 18027100 | 18027223 | - | - |
zma-MIR393a | MI0001845 | 3374 | chr2 | 738724 | 738849 | + | - |
zma-MIR408a | MI0001846 | 1422 | chr3 | 58127890 | 58128080 | - | - |
zma-MIR156k | MI0001847 | 9178 | chr6 | 98967260 | 98967382 | - | - |
zma-MIR160f | MI0001848 | 1329 | chr2 | 241093436 | 241093551 | - | - |
sbi-MIR399h | MI0001849 | None | chr10 | 48189611 | 48189742 | + | - |
sbi-MIR399i | MI0001850 | None | chr6 | 54075299 | 54075419 | + | - |
sbi-MIR159b | MI0001851 | None | chr3 | 1229688 | 1229940 | - | - |
sbi-MIR164c | MI0001852 | None | chr1 | 68718394 | 68718546 | - | - |
sbi-MIR166g | MI0001853 | None | chr4 | 64857514 | 64857647 | - | - |
sbi-MIR171f | MI0001854 | None | chr4 | 62745972 | 62746090 | - | - |
sbi-MIR395f | MI0001855 | None | chr6 | 57228009 | 57228130 | - | - |
sbi-MIR156e | MI0001856 | None | chr10 | 55313871 | 55313993 | + | - |
ptc-MIR156b | MI0002185 | None | CM000342.2 | 22869899 | 22869999 | - | - |
ptc-MIR156d | MI0002187 | None | None | None | - | ||
ptc-MIR156g | MI0002190 | None | CM000341.2 | 11875533 | 11875635 | - | - |
ptc-MIR156h | MI0002191 | None | CM000340.2 | 7938832 | 7938934 | - | - |
ptc-MIR156i | MI0002192 | None | CM000348.2 | 4332062 | 4332160 | - | - |
ptc-MIR156j | MI0002193 | None | CM000351.2 | 4013699 | 4013798 | + | - |
ptc-MIR160b | MI0002202 | None | CM000344.2 | 2253371 | 2253468 | - | - |
ptc-MIR160c | MI0002203 | None | CM000346.2 | 19585212 | 19585309 | + | - |
ptc-MIR162a | MI0002209 | None | CM000348.2 | 5079325 | 5079431 | + | - |
ptc-MIR162b | MI0002210 | None | CM000351.2 | 6727251 | 6727357 | + | - |
ptc-MIR164b | MI0002213 | None | CM000342.2 | 8032134 | 8032295 | + | - |
ptc-MIR164e | MI0002216 | None | CM000352.2 | 12933923 | 12934077 | + | - |
ptc-MIR166a | MI0002218 | None | CM000337.2 | 8837231 | 8837394 | + | - |
ptc-MIR166b | MI0002219 | None | CM000338.2 | 2744789 | 2744894 | + | - |
ptc-MIR166c | MI0002220 | None | CM000338.2 | 13513492 | 13513625 | + | - |
ptc-MIR166d | MI0002221 | None | CM000341.2 | 4841691 | 4841795 | - | - |
ptc-MIR166e | MI0002222 | None | CM000341.2 | 22785312 | 22785417 | - | - |
ptc-MIR166f | MI0002223 | None | CM000343.2 | 3117083 | 3117187 | - | - |
ptc-MIR166g | MI0002224 | None | CM000344.2 | 10886852 | 10886954 | - | - |
ptc-MIR166h | MI0002225 | None | CM000346.2 | 9569645 | 9569745 | + | - |
ptc-MIR166j | MI0002227 | None | CM000350.2 | 7398187 | 7398329 | + | - |
ptc-MIR166n | MI0002231 | None | CM000355.2 | 5666163 | 5666493 | - | - |
ptc-MIR166o | MI0002232 | None | CM000349.2 | 3705072 | 3705391 | + | - |
ptc-MIR167b | MI0002236 | None | CM000338.2 | 3064788 | 3064883 | - | - |
ptc-MIR167d | MI0002238 | None | CM000341.2 | 22447920 | 22448024 | + | - |
ptc-MIR168a | MI0002243 | None | CM000339.2 | 4412270 | 4412429 | - | - |
ptc-MIR168b | MI0002244 | None | CM000340.2 | 22942209 | 22942344 | - | - |
ptc-MIR169a | MI0002245 | None | CM000337.2 | 3089790 | 3089954 | - | - |
ptc-MIR169g | MI0002257 | None | None | None | - | ||
ptc-MIR169i | MI0002259 | None | CM000337.2 | 31302443 | 31302565 | - | - |
ptc-MIR169k | MI0002261 | None | CM000339.2 | 16015779 | 16015981 | - | - |
ptc-MIR169l | MI0002262 | None | CM000353.2 | 7526169 | 7526311 | - | - |
ptc-MIR169m | MI0002263 | None | CM000353.2 | 7526473 | 7526591 | - | - |
ptc-MIR171a | MI0002277 | None | CM000340.2 | 764743 | 764846 | + | - |
ptc-MIR171b | MI0002278 | None | None | None | - | ||
ptc-MIR171f | MI0002282 | None | CM000338.2 | 908813 | 908942 | + | - |
ptc-MIR171i | MI0002285 | None | CM000341.2 | 7776851 | 7776985 | + | - |
ptc-MIR172b | MI0002288 | None | CM000345.2 | 1730120 | 1730259 | - | - |
ptc-MIR172d | MI0002290 | None | CM000337.2 | 24216475 | 24216656 | + | - |
ptc-MIR172e | MI0002291 | None | CM000345.2 | 4502775 | 4502907 | + | - |
ptc-MIR172f | MI0002292 | None | CM000340.2 | 21285184 | 21285344 | + | - |
ptc-MIR172g | MI0002293 | None | CM000346.2 | 18369999 | 18370141 | - | - |
ptc-MIR172h | MI0002294 | None | CM000344.2 | 3367114 | 3367256 | + | - |
ptc-MIR319a | MI0002296 | None | CM000337.2 | 7887933 | 7888120 | - | - |
ptc-MIR319b | MI0002297 | None | CM000339.2 | 13875330 | 13875514 | + | - |
ptc-MIR319c | MI0002298 | None | CM000349.2 | 15551280 | 15551475 | + | - |
ptc-MIR319d | MI0002299 | None | CM000355.2 | 15846565 | 15846757 | + | - |
ptc-MIR319f | MI0002301 | None | CM000349.2 | 8843265 | 8843466 | + | - |
ptc-MIR319g | MI0002302 | None | CM000355.2 | 10665338 | 10665541 | + | - |
ptc-MIR395c | MI0002317 | None | CM000342.2 | 8406701 | 8406801 | + | - |
ptc-MIR395g | MI0002321 | None | CM000352.2 | 13793446 | 13793547 | + | - |
ptc-MIR395i | MI0002323 | None | CM000352.2 | 13797871 | 13797972 | + | - |
ptc-MIR396a | MI0002325 | None | CM000342.2 | 4636167 | 4636289 | + | - |
ptc-MIR396b | MI0002326 | None | None | None | - | ||
ptc-MIR396d | MI0002328 | None | CM000342.2 | 4642885 | 4643050 | - | - |
ptc-MIR396e | MI0002329 | None | None | None | - | ||
ptc-MIR399a | MI0002338 | None | CM000340.2 | 4598194 | 4598313 | - | - |
ptc-MIR399f | MI0002343 | None | CM000340.2 | 4599656 | 4599756 | + | - |
ptc-MIR399g | MI0002344 | None | CM000340.2 | 4640161 | 4640254 | - | - |
ptc-MIR403a | MI0002350 | None | CM000338.2 | 15394788 | 15394919 | + | - |
ptc-MIR408 | MI0002352 | None | CM000338.2 | 14802196 | 14802300 | + | - |
ptc-MIR403d | MI0025470 | None | None | None | - |